RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 ZNF81P51508 661 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 HSD11B2P80365 405 aa13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 HMX1Q9NP08 348 aaPredicted RBP13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 MRPS30Q9NP92 439 aaKnown RBP13.65□□□□□ -0.22
CCDC88A-201ENST00000263630 SLC19A2O60779 497 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 CYP3A4P08684 503 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 PSPHP78330 225 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 C6orf183Q5T699 404 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 THEM6Q8WUY1 208 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 LPGAT1Q92604 370 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 ISCA1Q9BUE6 129 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 GNG8Q9UK08 70 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 TMEM94Q12767 1356 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 A0A1W2PQ45 241 aaPredicted RBP13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 A0A1W2PQY0 241 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 PRR5-ARHGAP8B1AHC4 643 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 NEDD8-MDP1E9PL57 170 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 CREBL2O60519 120 aaPredicted RBP13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 C8BP07358 591 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 POU2F1P14859 743 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 ARHGAP8P85298 464 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 IL23RQ5VWK5 629 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 BPGMP07738 259 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 NUDT17P0C025 328 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 RAC2P15153 192 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 ABCG1P45844 678 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 FNTBP49356 437 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 USB1Q9BQ65 265 aaKnown RBP13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 YTHDF1Q9BYJ9 559 aaKnown RBP13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 MAGED1Q9Y5V3 778 aaPredicted RBP13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 BNIP3Q12983 259 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 CHIT1Q13231 466 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 SH3D19Q5HYK7 790 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 SLC26A9Q7LBE3 791 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 RLIMQ9NVW2 624 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 HSPB11Q9Y547 144 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 OXSR1O95747 527 aaPredicted RBP13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 PKMP14618 531 aaKnown RBP13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 CCR8P51685 355 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 LCP2Q13094 533 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 ZNF584Q8IVC4 421 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 ADARB2Q9NS39 739 aaKnown RBP13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 DNAJB9Q9UBS3 223 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 USP49Q70CQ1 688 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 BIN3Q9NQY0 253 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 hCG_2039718K7EN88 272 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 DIRAS3O95661 229 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 CCND3P30281 292 aaPredicted RBP13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 EEF1A2Q05639 463 aaKnown RBP13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 NTRK2Q16620 822 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 FAM182BQ5T319 152 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 ART4Q93070 314 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 SLC25A36Q96CQ1 311 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 CD180Q99467 661 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 TM9SF2Q99805 663 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 LACRTQ9GZZ8 138 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 SPATC1LQ9H0A9 340 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 NUP153P49790 1475 aaKnown RBP13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 CLDN11O75508 207 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 ALDH3B1P43353 468 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 NCBP2P52298 156 aaKnown RBP eCLIP13.64□□□□□ -0.232e-9■□□□□ 10.4
CCDC88A-201ENST00000263630 PER3P56645 1201 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 SLC3A1Q07837 685 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 FAM124AQ86V42 546 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 SLC41A3Q96GZ6 507 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 SRMSQ9H3Y6 488 aa13.64□□□□□ -0.23
CCDC88A-201ENST00000263630 TCRBV9S1A1TA0A576 114 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 SULT1B1O43704 296 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 ENTPD1P49961 510 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 DHCR24Q15392 516 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 ARL9Q6T311 187 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 MECRQ9BV79 373 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 PLEKHM1Q9Y4G2 1056 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 IDH3GP51553 393 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 ZNF41P51814 821 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 TMCO2Q7Z6W1 182 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 OR10A6Q8NH74 314 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 MTMR8Q96EF0 704 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 ITPAQ9BY32 194 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 MRPS17Q9Y2R5 130 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 CEMIPQ8WUJ3 1361 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 CLRN1P58418 232 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 HTD2P86397 168 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 PGM5Q15124 567 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 NPNTQ6UXI9 565 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 ZNF283Q8N7M2 679 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 TBX5Q99593 518 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 DNTTIP1Q9H147 329 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 DCSTAMPQ9H295 470 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 TMEM134Q9H6X4 195 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 MRM3Q9HC36 420 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 HCN2Q9UL51 889 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 FARS2O95363 451 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 HLA-DPB1P04440 258 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 NRIP1P48552 1158 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 OAZ1P54368 228 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 EPHA10Q5JZY3 1008 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 TPRG1LQ5T0D9 272 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 TMEM110Q86TL2 294 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 FIBCD1Q8N539 461 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms