RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 BRAT1Q6PJG6 821 aa10.51□□□□□ -0.73
CD44-201ENST00000263398 GDPD4Q6W3E5 623 aa10.51□□□□□ -0.73
CD44-201ENST00000263398 CDHR3Q6ZTQ4 885 aa10.51□□□□□ -0.73
CD44-201ENST00000263398 REM2Q8IYK8 340 aaPredicted RBP10.51□□□□□ -0.73
CD44-201ENST00000263398 C1orf52Q8N6N3 182 aaKnown RBP10.51□□□□□ -0.73
CD44-201ENST00000263398 TTLQ8NG68 377 aa10.51□□□□□ -0.73
CD44-201ENST00000263398 GEMIN6Q8WXD5 167 aaKnown RBP10.51□□□□□ -0.73
CD44-201ENST00000263398 FIZ1Q96SL8 496 aa10.51□□□□□ -0.73
CD44-201ENST00000263398 TMEM248Q9NWD8 314 aa10.51□□□□□ -0.73
CD44-201ENST00000263398 POFUT2Q9Y2G5 429 aa10.51□□□□□ -0.73
CD44-201ENST00000263398 LRP6O75581 1613 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 TPST2O60704 377 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 CHRM5P08912 532 aaPredicted RBP10.5□□□□□ -0.73
CD44-201ENST00000263398 TFPIP10646 304 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 TGFBIQ15582 683 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 FBXO43Q4G163 708 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 FRRS1Q6ZNA5 592 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 ADGRG6Q86SQ4 1221 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 SH3RF2Q8TEC5 729 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 DENND1AQ8TEH3 1009 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 CEP295NLQ96MC4 621 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 TMEM74Q96NL1 305 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 SLC35A5Q9BS91 424 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 DCSTAMPQ9H295 470 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 DSN1Q9H410 356 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 POPDC3Q9HBV1 291 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 EVA1BQ9NVM1 165 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 MOCS1Q9NZB8 636 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 RBMX2Q9Y388 322 aaKnown RBP10.5□□□□□ -0.73
CD44-201ENST00000263398 TRPM3Q9HCF6 1732 aaPredicted RBP10.5□□□□□ -0.73
CD44-201ENST00000263398 CREG1O75629 220 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 HMGN1P05114 100 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 RORCP51449 518 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 DSTNP60981 165 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 GPR17Q13304 367 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 CCL14Q16627 93 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 DUOXA1Q1HG43 343 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 RNASE12Q5GAN4 147 aaKnown RBP10.5□□□□□ -0.73
CD44-201ENST00000263398 SPANXN4Q5MJ08 99 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 TPRG1Q6ZUI0 275 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 GET4Q7L5D6 327 aaPredicted RBP10.5□□□□□ -0.73
CD44-201ENST00000263398 GOLGA7Q7Z5G4 137 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 WDTC1Q8N5D0 677 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 PJA1Q8NG27 643 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 CD99L2Q8TCZ2 262 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 CRELD1Q96HD1 420 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 LMLNQ96KR4 655 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 C12orf66Q96MD2 445 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 ZSCAN5AQ9BUG6 496 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 OR51V1Q9H2C8 321 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 FAM120CQ9NX05 1096 aaKnown RBP10.5□□□□□ -0.73
CD44-201ENST00000263398 LOC100130705A0A1B0GUX0 176 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 IQCMA0A1B0GVH7 501 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 MANBAO00462 879 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 CA12O43570 354 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 PRAMEF11O60813 436 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 TGFB1P01137 390 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 CSNK2A2P19784 350 aaPredicted RBP10.5□□□□□ -0.73
CD44-201ENST00000263398 CPN2P22792 545 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 IVDP26440 423 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 CSTF2P33240 577 aaKnown RBP eCLIP10.5□□□□□ -0.73
CD44-201ENST00000263398 IGFALSP35858 605 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 MADCAM1Q13477 382 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 ATAT1Q5SQI0 421 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 PEX13Q92968 403 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 GMLQ99445 158 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 KCNS3Q9BQ31 491 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 CCDC106Q9BWC9 280 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 NSUN3Q9H649 340 aaKnown RBP10.5□□□□□ -0.73
CD44-201ENST00000263398 CCDC59Q9P031 241 aaKnown RBP10.5□□□□□ -0.73
CD44-201ENST00000263398 FAM172BPA6NC97 362 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 TMEM88BA6NKF7 163 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 M0QX08 132 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 ACOX3O15254 700 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 HTRA2O43464 458 aaPredicted RBP10.5□□□□□ -0.73
CD44-201ENST00000263398 RASGRP1O95267 797 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 MATN4O95460 622 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 PRAMEF12O95522 483 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 MPIP34949 423 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 XKP51811 444 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 ERVK-21P61565 698 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 GANABQ14697 944 aaKnown RBP10.5□□□□□ -0.73
CD44-201ENST00000263398 PTCHD3Q3KNS1 767 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 PDCD4Q53EL6 469 aaKnown RBP10.5□□□□□ -0.73
CD44-201ENST00000263398 EIPR1Q53HC9 387 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 OLFML2AQ68BL7 652 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 ADNP2Q6IQ32 1131 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 COX18Q8N8Q8 333 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 OR10H4Q8NGA5 316 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 AURKBQ96GD4 344 aaPredicted RBP10.5□□□□□ -0.73
CD44-201ENST00000263398 PYURFQ96I23 114 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 PCYT2Q99447 389 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 CDADC1Q9BWV3 514 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 MAGEE1Q9HCI5 957 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 SLC35C2Q9NQQ7 365 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 CTPS2Q9NRF8 586 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 SLC45A1Q9Y2W3 748 aa10.5□□□□□ -0.73
CD44-201ENST00000263398 SPIN1Q9Y657 262 aaPredicted RBP10.5□□□□□ -0.73
CD44-201ENST00000263398 SLC6A4P31645 630 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 GDF5P43026 501 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms