RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Tmsb15lQ8C0W0 80 aa15.21■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Col26a1Q91VF6 440 aa15.21■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 GghQ9Z0L8 317 aa15.21■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Olfr652B9EHE6 318 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Daw1D3Z7A5 415 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Gm8180E9PXN0 145 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Slc6a2O55192 617 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 H2-Q8P14430 326 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Cxcr2P35343 359 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 H2-Q6P79568 326 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Zc3h12aQ5D1E7 596 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Slc10a7Q5PT53 340 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 CltbQ6IRU5 229 aaKnown RBP15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Znf513Q6PD29 541 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 AptxQ7TQC5 342 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Amigo2Q80ZD9 519 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 PimregQ8BFY7 231 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 C1qtnf7Q8BVD7 289 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Spp2Q8K1I3 203 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Hid1Q8R1F6 788 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Adap2Q8R2V5 381 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Ints14Q8R3P6 515 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Mat1aQ91X83 396 aaKnown RBP15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Rab13Q9DD03 202 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Nrip2Q9JHR9 270 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Scg5P12961 212 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Csnk2bP67871 215 aaKnown RBP15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Alg10bQ3UGP8 474 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Klra2Q60660 288 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 FaddQ61160 205 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Pih1d2Q8CHR9 315 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Zfp709Q8VC29 727 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Fbxl12Q9EPX5 326 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Col11a2Q64739 1736 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Armc4B2RY50 1037 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Gm28048F7BCN0 99 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 AldoaP05064 364 aaKnown RBP15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 CtswP56203 371 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Psme2P97372 239 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Rgs14P97492 547 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Vmn1r24Q8R2D6 296 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Unc50Q9CQ61 259 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Sipa1l3G3X9J0 1776 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Gon4lQ9DB00 2260 aa15.2■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Ring1O35730 406 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 DcnP28654 354 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 PnmtP40935 295 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Adcyap1r1P70205 496 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 DgkbQ6NS52 802 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Taf1cQ6PDZ2 836 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 IrgcQ8C262 412 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Polr1eQ8K202 482 aaKnown RBP15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Treml1Q8K558 317 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Olfr1310Q8VF85 312 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Ptbp2Q91Z31 531 aaKnown RBP15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Kat8Q9D1P2 458 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 4930503E14RikQ9D583 177 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Aif1lQ9EQX4 150 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Ptges3Q9R0Q7 160 aaKnown RBP15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Gm7145A0A087WS64 360 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Cldn34b1B1AZQ8 209 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Cyp2w1E9Q816 493 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Oaz2O08608 189 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 JunP05627 334 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 WarsP32921 481 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Nudt1P53368 156 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Pdcd5P56812 126 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Tuba1cP68373 449 aaKnown RBP15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Ccdc177Q3UHB8 706 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Osgepl1Q6PEB4 414 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Yipf4Q8C407 246 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Adgrg2Q8CJ12 1009 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Cldn34b2Q9D9N2 209 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Stk19Q9JHN8 254 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Faap100A2ACJ2 879 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Ptrhd1D3Z4S3 140 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Slc28a1E9PXX9 648 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Gm17555F6U8B9 371 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Gm16506F7ANP4 213 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 NagluO88325 739 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Syt4P40749 425 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Lhx1P63006 406 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Znf800Q0VEE6 662 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Ptx4Q6RUU0 478 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 ItpkcQ7TS72 678 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Thnsl2Q80W22 483 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Baiap2Q8BKX1 535 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Zbtb9Q8CDC7 459 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Adgrg1Q8K209 687 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Mptx1Q8R1M8 219 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Tsen15Q8R3W5 168 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Uts2rQ8VIH9 385 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Ly6kQ9CWP4 154 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 MtpapQ9D0D3 585 aaKnown RBP15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Sars2Q9JJL8 518 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Fkbp9Q9Z247 570 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Gm20503G3UZK1 150 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Gm6882J3KMT3 313 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Vmn2r21K7N6Y7 853 aa15.19■□□□□ 0.02
Ccdc88b-201ENSMUST00000113440 Vmn2r20L7N2B1 853 aa15.19■□□□□ 0.02
Retrieved 100 of 22,080 RNA–protein pairs in 23.3 ms