RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 PRAMEF17Q5VTA0 474 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 LIPMQ5VYY2 423 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CRTC3Q6UUV7 619 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ERMP1Q7Z2K6 904 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 REC114Q7Z4M0 266 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TRAPPC5Q8IUR0 188 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF567Q8N184 647 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SDR16C5Q8N3Y7 309 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ZADH2Q8N4Q0 377 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF283Q8N7M2 679 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SMG8Q8ND04 991 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 OR56B2PQ8NGI1 322 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 KCTD13Q8WZ19 329 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 HLA-CQ95604 372 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SENP7Q9BQF6 1050 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GULP1Q9UBP9 304 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SPO11Q9Y5K1 396 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 RNASEK-C17orf49H0YIS7 233 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 H3BRB1 525 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 K7EQM0 130 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PLK4O00444 970 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 KCNN4O15554 427 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 HSPA12AO43301 675 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TRMUO75648 421 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 RP2O75695 350 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PCCAP05165 728 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 FABP1P07148 127 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CYP3A4P08684 503 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ATP1A3P13637 1013 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 BRCC3P46736 316 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 HTR5AP47898 357 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 NEK3P51956 506 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GSTM4Q03013 218 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CDK5R2Q13319 367 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CBX2Q14781 532 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CBWD6Q4V339 395 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 BOLA3Q53S33 107 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CBWD3Q5JTY5 395 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CBWD5Q5RIA9 395 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 MANEALQ5VSG8 457 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TRIM40Q6P9F5 258 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CRELD2Q6UXH1 353 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 RIPOR1Q6ZS17 1223 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TMPRSS6Q8IU80 811 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GALNT13Q8IUC8 556 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CBWD2Q8IUF1 395 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CELF5Q8N6W0 485 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 RNF149Q8NC42 400 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 KIAA0895Q8NCT3 520 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SPATA4Q8NEY3 305 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 OR2W6PQ8NHA6 318 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 IPCEF1Q8WWN9 437 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 BMFQ96LC9 184 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ZIM3Q96PE6 472 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CBWD1Q9BRT8 395 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TBL1XR1Q9BZK7 514 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF334Q9HCZ1 680 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ADPRHL2Q9NX46 363 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ASF1AQ9Y294 204 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 NAALAD2Q9Y3Q0 740 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 A0A1W2PP64 1363 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 A2MP01023 1474 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 A0A075B6Q4 140 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 BHLHE40O14503 412 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 REM1O75628 298 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 DDNO94850 711 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PRKCAP17252 672 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 UQCRC2P22695 453 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 LHCGRP22888 699 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CRKLP46109 303 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ERVK-24P63145 666 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ELF3P78545 371 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 FOLH1Q04609 750 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM44Q2T9K0 475 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SLC39A12Q504Y0 691 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 MARC1Q5VT66 337 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 DPY19L2P1Q6NXN4 242 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 WDR59Q6PJI9 974 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SAPCD2Q86UD0 394 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 NLRP8Q86W28 1048 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 KCT2Q8NC54 265 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SORCS1Q8WY21 1168 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 UPRTQ96BW1 309 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ZDHHC5Q9C0B5 715 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 EIF2B4Q9UI10 523 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 MBD1Q9UIS9 605 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 FAM96BQ9Y3D0 163 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 NEU2Q9Y3R4 380 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TLL2Q9Y6L7 1015 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CNTNAP2Q9UHC6 1331 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GRIN2AQ12879 1464 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SETBP1Q9Y6X0 1596 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 FAM86C2PA6NEL3 165 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CBY3A6NI87 242 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 UTYO14607 1347 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 RNF13O43567 381 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PLRG1O43660 514 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 RAMP2O60895 175 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 APRTP07741 180 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 RARGP13631 454 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms