RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	TRPM8	Q7Z2W7	1104 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	TAF8	Q7Z7C8	310 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	MTDH	Q86UE4	582 aa	Known RBP	11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	SDR16C5	Q8N3Y7	309 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	FBXL6	Q8N531	539 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	CDYL2	Q8N8U2	506 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	L3MBTL4	Q8NA19	623 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	PPFIBP2	Q8ND30	876 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	METTL6	Q8TCB7	284 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	ACTRT2	Q8TDY3	377 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	TWIST2	Q8WVJ9	160 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	ZFPM2	Q8WW38	1151 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	CXorf40B	Q96DE9	158 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	MAEL	Q96JY0	434 aa	Known RBP	11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	MIPEP	Q99797	713 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	SLC29A3	Q9BZD2	475 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	PCBD2	Q9H0N5	130 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	TCEAL2	Q9H3H9	227 aa	Predicted RBP	11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	KIR3DX1	Q9H7L2	352 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	TCF7L2	Q9NQB0	619 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	TAAR2	Q9P1P5	351 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	TRPS1	Q9UHF7	1281 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	KCNE2	Q9Y6J6	123 aa		11.41	□□□□□ -0.58
CLN6-223	ENST00000637823	SDK1	Q7Z5N4	2213 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	ZDBF2	Q9HCK1	2354 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	KIR2DS5	A0A0G2JLQ3	304 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823		A0A0G2JNG1	304 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	OR52A4P	A6NMU1	304 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	KIR2DS3	K7RE56	304 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	HGS	O14964	777 aa	Predicted RBP	11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	SKAP2	O75563	359 aa	Predicted RBP	11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	EML2	O95834	649 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	CAPN1	P07384	714 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	SERPINA6	P08185	405 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	GNS	P15586	552 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	NPPB	P16860	134 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	XRCC1	P18887	633 aa	Predicted RBP	11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	GNAZ	P19086	355 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	HMOX2	P30519	316 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	CSNK1E	P49674	416 aa	Known RBP	11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	FOXA1	P55317	472 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	CHIT1	Q13231	466 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	KIR2DS5	Q14953	304 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	ELOC	Q15369	112 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	ZNF528	Q3MIS6	628 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	GGTA1P	Q4G0N0	100 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	PRRT3	Q5FWE3	981 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	DUS1L	Q6P1R4	473 aa	Known RBP	11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	LCTL	Q6UWM7	567 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	RNF165	Q6ZSG1	346 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	ARMCX6	Q7L4S7	300 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	GBP7	Q8N8V2	638 aa	Predicted RBP	11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	CEP70	Q8NHQ1	597 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	HMGCLL1	Q8TB92	370 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	SMPDL3A	Q92484	453 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	CCT6B	Q92526	530 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	NELL1	Q92832	810 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	ZC3H10	Q96K80	434 aa	Known RBP	11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	CDK15	Q96Q40	435 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	OR4K3	Q96R72	315 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	KCNA7	Q96RP8	456 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	HAUS8	Q9BT25	410 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	MENT	Q9BUN1	341 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	WDR55	Q9H6Y2	383 aa	Predicted RBP	11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	ACTR8	Q9H981	624 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	ERVMER34-1	Q9H9K5	563 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	CCDC177	Q9NQR7	707 aa	Predicted RBP	11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	ZNF624	Q9P2J8	865 aa	Predicted RBP	11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	SPAST	Q9UBP0	616 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	APOBEC3B	Q9UH17	382 aa	Known RBP	11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	PLAGL1	Q9UM63	463 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	TRIM33	Q9UPN9	1127 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	RNF11	Q9Y3C5	154 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	DYRK1B	Q9Y463	629 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	TIMM22	Q9Y584	194 aa		11.4	□□□□□ -0.58
CLN6-223	ENST00000637823	CACNA1E	Q15878	2313 aa		11.4	□□□□□ -0.59
CLN6-223	ENST00000637823	GOLGA8Q	A0A0J9YX86	632 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823		A0A1B0GTW7	788 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	GOLGA8O	A6NCC3	632 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	ERICH4	A6NGS2	130 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	GOLGA8N	F8WBI6	632 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	FCHO1	O14526	889 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	PIP5K1B	O14986	540 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	HR	O43593	1189 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	ULK1	O75385	1050 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	WFS1	O76024	890 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	KRT6A	P02538	564 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	KRT6B	P04259	564 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	JUN	P05412	331 aa	Known RBP	11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	EPHA3	P29320	983 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	PKLR	P30613	574 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	HNF4A	P41235	474 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	SLC19A1	P41440	591 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	KRT6C	P48668	564 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	RAB28	P51157	221 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	HNRNPK	P61978	463 aa	Known RBP eCLIP	11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	TBPL1	P62380	186 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	IRF8	Q02556	426 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	C1orf61	Q13536	156 aa		11.39	□□□□□ -0.59
CLN6-223	ENST00000637823	FASTK	Q14296	549 aa	Known RBP	11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms