RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 NME5P56597 212 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 YPEL5P62699 121 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 ERVK-8P63133 956 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 ELF3P78545 371 aaPredicted RBP16.35■□□□□ 0.21
CLN3-252ENST00000636907 SLC25A3Q00325 362 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 TAP2Q03519 686 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 PRKG2Q13237 762 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 NR6A1Q15406 480 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 ZRSR2Q15696 482 aaKnown RBP16.35■□□□□ 0.21
CLN3-252ENST00000636907 AGKQ53H12 422 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 XKR6Q5GH73 641 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 TRIM46Q7Z4K8 759 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 FAM160A2Q8N612 972 aaPredicted RBP16.35■□□□□ 0.21
CLN3-252ENST00000636907 OR9I1Q8NGQ6 314 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 TSACCQ96A04 125 aaPredicted RBP16.35■□□□□ 0.21
CLN3-252ENST00000636907 BIRC7Q96CA5 298 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 MAGEB10Q96LZ2 347 aaPredicted RBP16.35■□□□□ 0.21
CLN3-252ENST00000636907 C1orf50Q9BV19 199 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 SGPP1Q9BX95 441 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 TRIT1Q9H3H1 467 aaKnown RBP16.35■□□□□ 0.21
CLN3-252ENST00000636907 CCDC167Q9P0B6 97 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 IGHV1OR15-9A0A0B4J2B8 117 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 PRAMEF26H0Y7S4 382 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 SLC28A1O00337 649 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 RGS14O43566 566 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 UGDHO60701 494 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 ZNF217O75362 1048 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 RASSF9O75901 435 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 PDYNP01213 254 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 IDO1P14902 403 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 JUPP14923 745 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 EZRP15311 586 aaKnown RBP16.34■□□□□ 0.21
CLN3-252ENST00000636907 CD22P20273 847 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 IDSP22304 550 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 TSTA3Q13630 321 aaPredicted RBP16.34■□□□□ 0.21
CLN3-252ENST00000636907 GSTA3Q16772 222 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 DNAL1Q4LDG9 190 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 LIPJQ5W064 366 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 HOMEZQ8IX15 550 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 FNDC5Q8NAU1 212 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 SELENOMQ8WWX9 145 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 C12orf66Q96MD2 445 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 NRTNQ99748 197 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 ELOVL6Q9H5J4 265 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 AIG1Q9NVV5 245 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 GPRC5BQ9NZH0 403 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 PNMA8BQ9ULN7 279 aaPredicted RBP16.34■□□□□ 0.21
CLN3-252ENST00000636907 SNX6Q9UNH7 406 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 GPR45Q9Y5Y3 372 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 CLGNO14967 610 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 ERGP11308 486 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 ITGAXP20702 1163 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 PXNP49023 591 aaPredicted RBP16.34■□□□□ 0.21
CLN3-252ENST00000636907 ACADVLP49748 655 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 NEK2P51955 445 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 THOP1P52888 689 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 HMGCS1Q01581 520 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 PCDH1Q08174 1060 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 DOC2AQ14183 400 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 CLCA4Q14CN2 919 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 AP5B1Q2VPB7 878 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 SUSD1Q6UWL2 747 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 Q6ZSR6 202 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 RD3Q7Z3Z2 195 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 ABI3BPQ7Z7G0 1075 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 FUNDC1Q8IVP5 155 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 TBC1D21Q8IYX1 336 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 MIER2Q8N344 545 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 NEIL2Q969S2 332 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 MCUR1Q96AQ8 359 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 RCN3Q96D15 328 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 PPP3R2Q96LZ3 170 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 FERD3LQ96RJ6 166 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 MENTQ9BUN1 341 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 CCDC177Q9NQR7 707 aaPredicted RBP16.34■□□□□ 0.21
CLN3-252ENST00000636907 PRDM8Q9NQV8 689 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 SDR39U1Q9NRG7 319 aaPredicted RBP16.34■□□□□ 0.21
CLN3-252ENST00000636907 SH2B3Q9UQQ2 575 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 KCNE2Q9Y6J6 123 aa16.34■□□□□ 0.21
CLN3-252ENST00000636907 PDZK1P1A8MUH7 402 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 A8MUI8 341 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 STK25O00506 426 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 TNFRSF10CO14798 259 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 AIM2O14862 343 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 NPPBP16860 134 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 GNAZP19086 355 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 PGM1P36871 562 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 MRPL19P49406 292 aaKnown RBP16.33■□□□□ 0.2
CLN3-252ENST00000636907 EMX2Q04743 252 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 RPS6KA2Q15349 733 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 MAPRE2Q15555 327 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 UAP1L1Q3KQV9 507 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 UBALD2Q8IYN6 164 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 RGL4Q8IZJ4 473 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 PJA1Q8NG27 643 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 OR13H1Q8NG92 308 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 ACPTQ9BZG2 426 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 BRINP2Q9C0B6 783 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 CHRDQ9H2X0 955 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 IMP3Q9NV31 184 aaKnown RBP16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms