RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 UGT2B7P16662 529 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 ITIH1P19827 911 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 HIST1H2ADP20671 130 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 PRDX3P30048 256 aaKnown RBP17.48■□□□□ 0.39
CLN3-239ENST00000628023 SERPINB9P50453 376 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 KIR2DS3Q14952 304 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 SPESP1Q6UW49 350 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 CMC1Q7Z7K0 106 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 CLEC14AQ86T13 490 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 ZNF605Q86T29 641 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 LMNTD1Q8N9Z9 388 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 LINC01555Q8NAE3 123 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 FBXO15Q8NCQ5 510 aaPredicted RBP17.48■□□□□ 0.39
CLN3-239ENST00000628023 SLC22A18Q96BI1 424 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 PRR11Q96HE9 360 aaPredicted RBP17.48■□□□□ 0.39
CLN3-239ENST00000628023 HIST1H2AHQ96KK5 128 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 PKP4Q99569 1192 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 HIST1H2AJQ99878 128 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 H2AFJQ9BTM1 129 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 MENTQ9BUN1 341 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 TRIM54Q9BYV2 358 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 ZNF768Q9H5H4 540 aaKnown RBP17.48■□□□□ 0.39
CLN3-239ENST00000628023 PARVBQ9HBI1 364 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 SPHK1Q9NYA1 384 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 ADAMTS6Q9UKP5 1117 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 IGHV5-51A0A0C4DH38 117 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 NPEPPSL1A6NEC2 478 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 MAP3K7O43318 606 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 KRT38O76015 456 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 CCL4P13236 92 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 CRABP2P29373 138 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 HSD17B2P37059 387 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 SERPINB8P50452 374 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 SLC29A2Q14542 456 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 ZKSCAN8Q15776 578 aaPredicted RBP17.47■□□□□ 0.39
CLN3-239ENST00000628023 WDR93Q6P2C0 686 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 FBXO38Q6PIJ6 1188 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 TMEM207Q6UWW9 146 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 CCDC81Q6ZN84 652 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 FRA10AC1Q70Z53 315 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 TRIM73Q86UV7 250 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 SYTL1Q8IYJ3 562 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 CARFQ8N187 725 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 PPM1MQ96MI6 270 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 CCDC77Q9BR77 488 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 SLC12A9Q9BXP2 914 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 C1GALT1Q9NS00 363 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 WDR70Q9NW82 654 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 CTNNAL1Q9UBT7 734 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 MGAQ8IWI9 3026 aa17.47■□□□□ 0.39
CLN3-239ENST00000628023 A0A0J9YY10 115 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 C1QL1O75973 258 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 ZBTB11O95625 1053 aaPredicted RBP17.46■□□□□ 0.39
CLN3-239ENST00000628023 SLC16A8O95907 504 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 CCDC166P0CW27 439 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 PNLIPRP1P54315 467 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 FOXM1Q08050 763 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 ARHGAP19Q14CB8 494 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 CYP2A13Q16696 494 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 TMTC4Q5T4D3 741 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 TBC1D1Q86TI0 1168 aaPredicted RBP17.46■□□□□ 0.39
CLN3-239ENST00000628023 KMT5CQ86Y97 462 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 ZNF843Q8N446 348 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 DENND1AQ8TEH3 1009 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 SNRNP27Q8WVK2 155 aaKnown RBP17.46■□□□□ 0.39
CLN3-239ENST00000628023 ANKRD49Q8WVL7 239 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 KLHL6Q8WZ60 621 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 PDLIM5Q96HC4 596 aaKnown RBP17.46■□□□□ 0.39
CLN3-239ENST00000628023 OR2A14Q96R47 310 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 UNKQ9C0B0 810 aaKnown RBP17.46■□□□□ 0.39
CLN3-239ENST00000628023 KLHL25Q9H0H3 589 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 ABCF3Q9NUQ8 709 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 OCIAD1Q9NX40 245 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 ARL15Q9NXU5 204 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.46■□□□□ 0.39
CLN3-239ENST00000628023 TLK1Q9UKI8 766 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 PDE10AQ9Y233 779 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 PCDHGA7Q9Y5G6 932 aa17.46■□□□□ 0.39
CLN3-239ENST00000628023 HELZ2Q9BYK8 2649 aaKnown RBP17.46■□□□□ 0.39
CLN3-239ENST00000628023 SLC9B1P1A6NJY1 282 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 K7ENP7 123 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 CDC7O00311 574 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 ENO2P09104 434 aaPredicted RBP17.45■□□□□ 0.38
CLN3-239ENST00000628023 FGF3P11487 239 aaPredicted RBP17.45■□□□□ 0.38
CLN3-239ENST00000628023 PVRP15151 417 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 NELFEP18615 380 aaKnown RBP17.45■□□□□ 0.38
CLN3-239ENST00000628023 CNTFP26441 200 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 TYK2P29597 1187 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 OAS2P29728 719 aaKnown RBP17.45■□□□□ 0.38
CLN3-239ENST00000628023 PEBP1P30086 187 aaKnown RBP17.45■□□□□ 0.38
CLN3-239ENST00000628023 RPA3P35244 121 aaPredicted RBP17.45■□□□□ 0.38
CLN3-239ENST00000628023 ETV5P41161 510 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 HSD11B2P80365 405 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 FASTKQ14296 549 aaKnown RBP17.45■□□□□ 0.38
CLN3-239ENST00000628023 CSHL1Q14406 222 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 SF1Q15637 639 aaKnown RBP17.45■□□□□ 0.38
CLN3-239ENST00000628023 PHKG1Q16816 387 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 SLC5A12Q1EHB4 618 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 LGSNQ5TDP6 509 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 TMEM164Q5U3C3 297 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms