RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 PVRP15151 417 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 ACPPP15309 386 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 MC4RP32245 332 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 ATP5OP48047 213 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 GABRA4P48169 554 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 ZNF140P52738 457 aaPredicted RBP6.04□□□□□ -1.44
CUX1-220ENST00000607092 HADHBP55084 474 aaKnown RBP6.04□□□□□ -1.44
CUX1-220ENST00000607092 LSM11P83369 360 aaKnown RBP eCLIP6.04□□□□□ -1.444e-6■■■□□ 14.8
CUX1-220ENST00000607092 PRKG2Q13237 762 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 IQCB1Q15051 598 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 TMED2Q15363 201 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 NKG7Q16617 165 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 HIF1AQ16665 826 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 P3H1Q32P28 736 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 AARS2Q5JTZ9 985 aaKnown RBP6.04□□□□□ -1.44
CUX1-220ENST00000607092 KAZNQ674X7 775 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 PACS1Q6VY07 963 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 UNC5AQ6ZN44 842 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 BBS12Q6ZW61 710 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 LINC00523Q86TU6 105 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 FJX1Q86VR8 437 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 SERPINA9Q86WD7 417 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 MCATQ8IVS2 390 aaKnown RBP6.04□□□□□ -1.44
CUX1-220ENST00000607092 ANKK1Q8NFD2 765 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 OR1N1Q8NGS0 311 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 ASZ1Q8WWH4 475 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 ELMO1Q92556 727 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 NR4A3Q92570 626 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 HAS2Q92819 552 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 INPP5DQ92835 1189 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 MVB12AQ96EY5 273 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 THOC3Q96J01 351 aaKnown RBP6.04□□□□□ -1.44
CUX1-220ENST00000607092 HS3ST6Q96QI5 342 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 OR2A14Q96R47 310 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 DNAJC7Q99615 494 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 CRB3Q9BUF7 120 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 UNKQ9C0B0 810 aaKnown RBP6.04□□□□□ -1.44
CUX1-220ENST00000607092 SPRTNQ9H040 489 aaPredicted RBP6.04□□□□□ -1.44
CUX1-220ENST00000607092 RNF32Q9H0A6 362 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 LRRC40Q9H9A6 602 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 CUTCQ9NTM9 273 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 C14orf105Q9NVL8 296 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 RIC8BQ9NVN3 520 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 SMARCAL1Q9NZC9 954 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 ABI3Q9P2A4 366 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 DHCR7Q9UBM7 475 aaKnown RBP6.04□□□□□ -1.44
CUX1-220ENST00000607092 ZNF282Q9UDV7 671 aaPredicted RBP6.04□□□□□ -1.44
CUX1-220ENST00000607092 ICKQ9UPZ9 632 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 NTNG1Q9Y2I2 539 aa6.04□□□□□ -1.44
CUX1-220ENST00000607092 TDRKHQ9Y2W6 561 aaKnown RBP6.04□□□□□ -1.44
CUX1-220ENST00000607092 ANKRD12Q6UB98 2062 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 PCM1Q15154 2024 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 hCG_1818297A0A087WSY0 165 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 FITM1A5D6W6 292 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 TXNDC9O14530 226 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 SOCS6O14544 535 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 KPNA5O15131 536 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 FANCGO15287 622 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 DDX3YO15523 660 aaKnown RBP6.03□□□□□ -1.44
CUX1-220ENST00000607092 GPR39O43194 453 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 SGTAO43765 313 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 VPS26AO75436 327 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 WFS1O76024 890 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 TJP3O95049 919 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 BMP10O95393 424 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 PTMAP06454 111 aaKnown RBP6.03□□□□□ -1.44
CUX1-220ENST00000607092 APOA4P06727 396 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 CYC1P08574 325 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 ERVK-10P10266 1014 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 TNNT1P13805 278 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 CD9P21926 228 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 PDHA2P29803 388 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 CA5AP35218 305 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 ADRA1AP35348 466 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 CCNFP41002 786 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 TNFSF10P50591 281 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 SLC9A5Q14940 896 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 NOMO1Q15155 1222 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 ZNF630Q2M218 657 aaPredicted RBP6.03□□□□□ -1.44
CUX1-220ENST00000607092 MUM1Q2TAK8 710 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 ASTE1Q2TB18 679 aaPredicted RBP6.03□□□□□ -1.44
CUX1-220ENST00000607092 KRTAP21-3Q3LHN1 58 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 ZNF658BQ4V348 819 aaPredicted RBP6.03□□□□□ -1.44
CUX1-220ENST00000607092 ANKRD20A2Q5SQ80 823 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 ANKRD20A1Q5TYW2 823 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 FAM69BQ5VUD6 431 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 ANKRD20A3Q5VUR7 823 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 CAVIN1Q6NZI2 390 aaKnown RBP6.03□□□□□ -1.44
CUX1-220ENST00000607092 CNSTQ6PJW8 725 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 KIRREL2Q6UWL6 708 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 GFRALQ6UXV0 394 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 UNC5DQ6UXZ4 953 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 NDUFAF7Q7L592 441 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 MRGPRGQ86SM5 289 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 CNGA4Q8IV77 575 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 DCUN1D3Q8IWE4 304 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 OR11G2Q8NGC1 345 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 OR5AR1Q8NGP9 310 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 MAGEC3Q8TD91 643 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 STYXQ8WUJ0 223 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms