RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 C1QL3Q5VWW1 255 aa12.02□□□□□ -0.49
TRIM28-212ENST00000597995 DRICH1Q6PGQ1 229 aaPredicted RBP12.02□□□□□ -0.49
TRIM28-212ENST00000597995 DNAAF3Q8N9W5 541 aa12.02□□□□□ -0.49
TRIM28-212ENST00000597995 ELMO1Q92556 727 aa12.02□□□□□ -0.49
TRIM28-212ENST00000597995 SLC22A18Q96BI1 424 aa12.02□□□□□ -0.49
TRIM28-212ENST00000597995 AGAP4Q96P64 663 aa12.02□□□□□ -0.49
TRIM28-212ENST00000597995 SLC26A1Q9H2B4 701 aa12.02□□□□□ -0.49
TRIM28-212ENST00000597995 WDR54Q9H977 334 aa12.02□□□□□ -0.49
TRIM28-212ENST00000597995 MRM3Q9HC36 420 aaKnown RBP12.02□□□□□ -0.49
TRIM28-212ENST00000597995 SLC6A20Q9NP91 592 aa12.02□□□□□ -0.49
TRIM28-212ENST00000597995 ENAMQ9NRM1 1142 aa12.02□□□□□ -0.49
TRIM28-212ENST00000597995 NOVA2Q9UNW9 492 aaKnown RBP12.02□□□□□ -0.49
TRIM28-212ENST00000597995 DRG1Q9Y295 367 aaKnown RBP12.02□□□□□ -0.49
TRIM28-212ENST00000597995 PPP2R2CQ9Y2T4 447 aa12.02□□□□□ -0.49
TRIM28-212ENST00000597995 TDRKHQ9Y2W6 561 aaKnown RBP12.02□□□□□ -0.49
TRIM28-212ENST00000597995 LRBAP50851 2863 aa12.02□□□□□ -0.49
TRIM28-212ENST00000597995 SNRNP200O75643 2136 aaKnown RBP12.01□□□□□ -0.49
TRIM28-212ENST00000597995 A0A1B0GX78 115 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 F8W8V4 182 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 FGGP02679 453 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 OR56A5P0C7T3 313 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 EDN3P14138 238 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 ALAS2P22557 587 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 TNFRSF8P28908 595 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 PEBP1P30086 187 aaKnown RBP12.01□□□□□ -0.49
TRIM28-212ENST00000597995 FOXL2P58012 376 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 SEMA3AQ14563 771 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 BRD3Q15059 726 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 TSTD2Q5T7W7 516 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 IRAK1BP1Q5VVH5 260 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 B3GNTL1Q67FW5 361 aaPredicted RBP12.01□□□□□ -0.49
TRIM28-212ENST00000597995 ZNF534Q76KX8 674 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 MCATQ8IVS2 390 aaKnown RBP12.01□□□□□ -0.49
TRIM28-212ENST00000597995 TRIM58Q8NG06 486 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 DNAJB14Q8TBM8 379 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 HDAC10Q969S8 669 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 VPS50Q96JG6 964 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 ALS2CR12Q96Q35 445 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 IL1RAPL1Q9NZN1 696 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 PAK5Q9P286 719 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 CDC23Q9UJX2 597 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 FBXL4Q9UKA2 621 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 NXT1Q9UKK6 140 aaKnown RBP12.01□□□□□ -0.49
TRIM28-212ENST00000597995 RIMKLBQ9ULI2 386 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 NUP210LQ5VU65 1888 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 ABCA12Q86UK0 2595 aa12.01□□□□□ -0.49
TRIM28-212ENST00000597995 HEATR9A2RTY3 570 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 E7EVH7 732 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 E2F3O00716 465 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 SOCS6O14544 535 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 DSCR3O14972 297 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 LRRTM2O43300 516 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 OR1I1O60431 355 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 GOT2P00505 430 aaKnown RBP12□□□□□ -0.49
TRIM28-212ENST00000597995 APRTP07741 180 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 ATXN8OSP0DMR3 200 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 ITGAXP20702 1163 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 MAGP20916 626 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 ADRA1DP25100 572 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 PKLRP30613 574 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 RAB28P51157 221 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 ZNF169Q14929 603 aaPredicted RBP12□□□□□ -0.49
TRIM28-212ENST00000597995 TLR1Q15399 786 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 NKG7Q16617 165 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 HIF1AQ16665 826 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 SYTL3Q4VX76 610 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 ZC3H12BQ5HYM0 836 aaKnown RBP12□□□□□ -0.49
TRIM28-212ENST00000597995 TCTE1Q5JU00 501 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 FCRL6Q6DN72 434 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 KIRREL2Q6UWL6 708 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 NAPRTQ6XQN6 538 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 PPP1R21Q6ZMI0 780 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 TTLL10Q6ZVT0 673 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 ZGRF1Q86YA3 2104 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 TMEM151BQ8IW70 566 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 PRELID2Q8N945 189 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 CCDC89Q8N998 374 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 GRHL3Q8TE85 626 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 FAR1Q8WVX9 515 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 TTC1Q99614 292 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 SPSB2Q99619 263 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 LHPPQ9H008 270 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 EPS8L2Q9H6S3 715 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 SEMA3GQ9NS98 782 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 INTS7Q9NVH2 962 aaKnown RBP12□□□□□ -0.49
TRIM28-212ENST00000597995 PLAGL1Q9UM63 463 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 ENTPD4Q9Y227 616 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 TCAF1Q9Y4C2 921 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 CSAG2Q9Y5P2 127 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 HS3ST3B1Q9Y662 390 aa12□□□□□ -0.49
TRIM28-212ENST00000597995 SVILO95425 2214 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 TCRBV7S3A2A0A539 114 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 HNRNPRO43390 633 aaKnown RBP11.99□□□□□ -0.49
TRIM28-212ENST00000597995 CEP104O60308 925 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 FKBP9O95302 570 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 S1PR4O95977 384 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 RPN2P04844 631 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 CD9P21926 228 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 CRADDP78560 199 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 CDC16Q13042 620 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms