RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 LRRC61Q9BV99 259 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 TRIM54Q9BYV2 358 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 OR52A5Q9H2C5 316 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 TCEAL2Q9H3H9 227 aaPredicted RBP11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 ZNF358Q9NW07 568 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 TMEM216Q9P0N5 145 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 GULP1Q9UBP9 304 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 PNMA8BQ9ULN7 279 aaPredicted RBP11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 PSMD13Q9UNM6 376 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 PLLPQ9Y342 182 aa11.73□□□□□ -0.53
SHKBP1-213ENST00000597325 COL27A1Q8IZC6 1860 aaPredicted RBP11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 SUPT3HB4E1H0 165 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 CDC7O00311 574 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 YKT6O15498 198 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 AQP9O43315 295 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 PLIN3O60664 434 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 SMIM24O75264 130 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 SUPT3HO75486 399 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 PROCP04070 461 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 ENO2P09104 434 aaPredicted RBP11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 MYL2P10916 166 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 SFTPCP11686 197 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 RPL10P27635 214 aaKnown RBP11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 PDHA2P29803 388 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 KRT33BQ14525 404 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 OR4D1Q15615 310 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 C16orf46Q6P387 395 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 TTC23LQ6PF05 361 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 GPSM1Q86YR5 675 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 SPNS2Q8IVW8 549 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 ARMC2Q8NEN0 867 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 RHEBL1Q8TAI7 183 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 MGARPQ8TDB4 240 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 LMX1AQ8TE12 382 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 DYDC1Q8WWB3 177 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 PTERQ96BW5 349 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 RMDN2Q96LZ7 410 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 C12orf66Q96MD2 445 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 SLC46A1Q96NT5 459 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 GPR78Q96P69 363 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 PAIP2Q9BPZ3 127 aaKnown RBP11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 TAAR2Q9P1P5 351 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 CPSF2Q9P2I0 782 aaKnown RBP11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 SLC17A7Q9P2U7 560 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 KLF15Q9UIH9 416 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 TMCO1Q9UM00 188 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 ASF1AQ9Y294 204 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 HEBP2Q9Y5Z4 205 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 PIKFYVEQ9Y2I7 2098 aa11.72□□□□□ -0.53
SHKBP1-213ENST00000597325 PRR19A6NJB7 356 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 CDRT15L2A8MXV6 281 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 KDM1AO60341 852 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 PSIP1O75475 530 aaKnown RBP11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 MATN4O95460 622 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 ANXA6P08133 673 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 HIST1H2AGP0C0S8 130 aaPredicted RBP11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 NEFHP12036 1026 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 HIST1H2ADP20671 130 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 BDKRB1P46663 353 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 ATP1A2P50993 1020 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 INHBCP55103 352 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 C1orf61Q13536 156 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 KRTAP21-3Q3LHN1 58 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 WASH2PQ6VEQ5 465 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 ISCA2Q86U28 154 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 TAX1BP1Q86VP1 789 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 SDR16C5Q8N3Y7 309 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 ZNF548Q8NEK5 533 aaPredicted RBP11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 CCL4L1Q8NHW4 92 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 MAGEC3Q8TD91 643 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 MCOLN3Q8TDD5 553 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 ASB11Q8WXH4 323 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 TFGQ92734 400 aaPredicted RBP11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 CXorf40BQ96DE9 158 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 PRR11Q96HE9 360 aaPredicted RBP11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 HIST1H2AHQ96KK5 128 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 CCNL2Q96S94 520 aaPredicted RBP11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 HIST1H2AJQ99878 128 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 EGFL8Q99944 293 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 H2AFJQ9BTM1 129 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 SLC25A18Q9H1K4 315 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 TRIT1Q9H3H1 467 aaKnown RBP11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 C12orf65Q9H3J6 166 aaKnown RBP11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 PARVBQ9HBI1 364 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 WASH6PQ9NQA3 447 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 PRDM8Q9NQV8 689 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 IMP3Q9NV31 184 aaKnown RBP11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 NUDT4Q9NZJ9 180 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 CD274Q9NZQ7 290 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 TBC1D29Q9UFV1 150 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 ADAMTS6Q9UKP5 1117 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 EMCNQ9ULC0 261 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 OARD1Q9Y530 152 aa11.71□□□□□ -0.53
SHKBP1-213ENST00000597325 OR5K4A6NMS3 321 aa11.7□□□□□ -0.54
SHKBP1-213ENST00000597325 B4DGG1 531 aa11.7□□□□□ -0.54
SHKBP1-213ENST00000597325 SDC3O75056 442 aa11.7□□□□□ -0.54
SHKBP1-213ENST00000597325 PIAS2O75928 621 aa11.7□□□□□ -0.54
SHKBP1-213ENST00000597325 CELA2BP08218 269 aaPredicted RBP11.7□□□□□ -0.54
SHKBP1-213ENST00000597325 TPBGLP0DKB5 382 aa11.7□□□□□ -0.54
SHKBP1-213ENST00000597325 MTHFD1P11586 935 aaKnown RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms