RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ACAT2Q9BWD1 397 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 SLC40A1Q9NP59 571 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 DNAJC11Q9NVH1 559 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 CPNE7Q9UBL6 633 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 RNF11Q9Y3C5 154 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 TRAF6Q9Y4K3 522 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 PTGDR2Q9Y5Y4 395 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 A0A1W2PPV9 198 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 PRR33A8MZF0 331 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 ERGP11308 486 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 EPB42P16452 691 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 NPPBP16860 134 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 PIK3CGP48736 1102 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 UBE2IP63279 158 aaKnown RBP24.31■■□□□ 1.48
SHMT1-207ENST00000580002 GALNT1Q10472 559 aaPredicted RBP24.31■■□□□ 1.48
SHMT1-207ENST00000580002 LRRC70Q7Z2Q7 622 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 FAM20CQ8IXL6 584 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 SFRP1Q8N474 314 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 OR4E2Q8NGC2 313 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 ATP6V1E2Q96A05 226 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 EBF4Q9BQW3 602 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 EML4Q9HC35 981 aaKnown RBP24.31■■□□□ 1.48
SHMT1-207ENST00000580002 SUSD2Q9UGT4 822 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 USH1CQ9Y6N9 552 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 TGDSO95455 350 aa24.3■■□□□ 1.48
SHMT1-207ENST00000580002 ARL1P40616 181 aaPredicted RBP24.3■■□□□ 1.48
SHMT1-207ENST00000580002 AQP5P55064 265 aa24.3■■□□□ 1.48
SHMT1-207ENST00000580002 CYP2A13Q16696 494 aa24.3■■□□□ 1.48
SHMT1-207ENST00000580002 UGT3A2Q3SY77 523 aa24.3■■□□□ 1.48
SHMT1-207ENST00000580002 GPRIN3Q6ZVF9 776 aa24.3■■□□□ 1.48
SHMT1-207ENST00000580002 KLHDC8AQ8IYD2 350 aa24.3■■□□□ 1.48
SHMT1-207ENST00000580002 SGPP1Q9BX95 441 aa24.3■■□□□ 1.48
SHMT1-207ENST00000580002 TRIM55Q9BYV6 548 aa24.3■■□□□ 1.48
SHMT1-207ENST00000580002 NSRP1Q9H0G5 558 aaKnown RBP24.3■■□□□ 1.48
SHMT1-207ENST00000580002 KIR3DX1Q9H7L2 352 aa24.3■■□□□ 1.48
SHMT1-207ENST00000580002 ERVMER34-1Q9H9K5 563 aa24.3■■□□□ 1.48
SHMT1-207ENST00000580002 DOLKQ9UPQ8 538 aa24.3■■□□□ 1.48
SHMT1-207ENST00000580002 COLEC10Q9Y6Z7 277 aa24.3■■□□□ 1.48
SHMT1-207ENST00000580002 A0A0G2JND7 137 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 GIMD1P0DJR0 217 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 MYF5P13349 255 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 XRCC1P18887 633 aaPredicted RBP24.29■■□□□ 1.48
SHMT1-207ENST00000580002 PKLRP30613 574 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 CCNG1P51959 295 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 GPR18Q14330 331 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 PDCD2Q16342 344 aaPredicted RBP24.29■■□□□ 1.48
SHMT1-207ENST00000580002 HLA-BQ31612 363 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 SCIMPQ6UWF3 145 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 GKN2Q86XP6 184 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 GATAD2AQ86YP4 633 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 CDYL2Q8N8U2 506 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 C10orf82Q8WW14 230 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 ZNF382Q96SR6 550 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 CAPN10Q9HC96 672 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 SPHK1Q9NYA1 384 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 POLG2Q9UHN1 485 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 LNPEPQ9UIQ6 1025 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 HEBP2Q9Y5Z4 205 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 ADAMTS9Q9P2N4 1935 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 E7EQ34 232 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 MATN2O00339 956 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 NOBOXO60393 691 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 SKAP2O75563 359 aaPredicted RBP24.29■■□□□ 1.48
SHMT1-207ENST00000580002 ESRRBO95718 433 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 MLYCDO95822 493 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 VIPP01282 170 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 GABPB1Q06547 395 aaPredicted RBP24.29■■□□□ 1.48
SHMT1-207ENST00000580002 DUOXA1Q1HG43 343 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 MILR1Q7Z6M3 343 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 SEC16BQ96JE7 1060 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 NUF2Q9BZD4 464 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 ARRDC1-AS1Q9H2J1 176 aa24.29■■□□□ 1.48
SHMT1-207ENST00000580002 EPB41L3Q9Y2J2 1087 aaPredicted RBP24.29■■□□□ 1.48
SHMT1-207ENST00000580002 CACNA1HO95180 2353 aa24.28■■□□□ 1.48
SHMT1-207ENST00000580002 LMO7DNF2Z398 122 aa24.28■■□□□ 1.48
SHMT1-207ENST00000580002 CD22P20273 847 aa24.28■■□□□ 1.48
SHMT1-207ENST00000580002 PEBP1P30086 187 aaKnown RBP24.28■■□□□ 1.48
SHMT1-207ENST00000580002 CDC16Q13042 620 aa24.28■■□□□ 1.48
SHMT1-207ENST00000580002 SLC9B1Q4ZJI4 515 aa24.28■■□□□ 1.48
SHMT1-207ENST00000580002 TRIM61Q5EBN2 209 aa24.28■■□□□ 1.48
SHMT1-207ENST00000580002 CATSPEREQ5SY80 951 aa24.28■■□□□ 1.48
SHMT1-207ENST00000580002 TCEAL6Q6IPX3 200 aa24.28■■□□□ 1.48
SHMT1-207ENST00000580002 CAPN13Q6MZZ7 669 aaPredicted RBP24.28■■□□□ 1.48
SHMT1-207ENST00000580002 TRIM48Q8IWZ4 208 aa24.28■■□□□ 1.48
SHMT1-207ENST00000580002 TCEAL3Q969E4 200 aa24.28■■□□□ 1.48
SHMT1-207ENST00000580002 NEIL2Q969S2 332 aa24.28■■□□□ 1.48
SHMT1-207ENST00000580002 TMEM120AQ9BXJ8 343 aa24.28■■□□□ 1.48
SHMT1-207ENST00000580002 TUBB1Q9H4B7 451 aa24.28■■□□□ 1.48
SHMT1-207ENST00000580002 KLHL14Q9P2G3 628 aa24.28■■□□□ 1.48
SHMT1-207ENST00000580002 DNAJC15Q9Y5T4 150 aa24.28■■□□□ 1.48
SHMT1-207ENST00000580002 AZIN1O14977 448 aa24.27■■□□□ 1.48
SHMT1-207ENST00000580002 PPM1DO15297 605 aa24.27■■□□□ 1.48
SHMT1-207ENST00000580002 TROVE2P10155 538 aaKnown RBP eCLIP24.27■■□□□ 1.48
SHMT1-207ENST00000580002 HTR6P50406 440 aa24.27■■□□□ 1.48
SHMT1-207ENST00000580002 RAB28P51157 221 aa24.27■■□□□ 1.48
SHMT1-207ENST00000580002 MYLK4Q86YV6 388 aaPredicted RBP24.27■■□□□ 1.48
SHMT1-207ENST00000580002 LCN9Q8WX39 176 aa24.27■■□□□ 1.48
SHMT1-207ENST00000580002 WDR55Q9H6Y2 383 aaPredicted RBP24.27■■□□□ 1.48
SHMT1-207ENST00000580002 CCDC177Q9NQR7 707 aaPredicted RBP24.27■■□□□ 1.48
SHMT1-207ENST00000580002 SPATA7Q9P0W8 599 aa24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms