RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 BTKQ06187 659 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 PCDH1Q08174 1060 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 C1orf61Q13536 156 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 FASTKQ14296 549 aaKnown RBP13.26□□□□□ -0.29
CCDC40-209ENST00000573474 KIR2DS5Q14953 304 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 SLC9B1Q4ZJI4 515 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 VWA5B1Q5TIE3 1220 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 GKN2Q86XP6 184 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 SDR16C5Q8N3Y7 309 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 CDYL2Q8N8U2 506 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 L3MBTL4Q8NA19 623 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 HMGCLL1Q8TB92 370 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 METTL6Q8TCB7 284 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 MAPK15Q8TD08 544 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 SMPDL3AQ92484 453 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 RILPQ96NA2 401 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 CDK15Q96Q40 435 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 OR4K3Q96R72 315 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 KCNA7Q96RP8 456 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 EBF4Q9BQW3 602 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 MENTQ9BUN1 341 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 SLC29A3Q9BZD2 475 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 PCBD2Q9H0N5 130 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 CAAP1Q9H8G2 361 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 ACTR8Q9H981 624 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 ERVMER34-1Q9H9K5 563 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 MEAF6Q9HAF1 191 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 PFDN4Q9NQP4 134 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 HEY2Q9UBP5 337 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 PILRBQ9UKJ0 227 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 DYRK1BQ9Y463 629 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 TIMM22Q9Y584 194 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 DNAJC15Q9Y5T4 150 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 KCNE2Q9Y6J6 123 aa13.26□□□□□ -0.29
CCDC40-209ENST00000573474 CEP192Q8TEP8 1941 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 TRBV23OR9-2A0A075B6M9 112 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 A0A1B0GVT2 93 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 HGSO14964 777 aaPredicted RBP13.25□□□□□ -0.29
CCDC40-209ENST00000573474 UGDHO60701 494 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 SKAP2O75563 359 aaPredicted RBP13.25□□□□□ -0.29
CCDC40-209ENST00000573474 CAPN1P07384 714 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 NPPBP16860 134 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 GNAZP19086 355 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 SERPINB3P29508 390 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 HMOX2P30519 316 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 PKLRP30613 574 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 CTSKP43235 329 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 IRF8Q02556 426 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 TSTA3Q13630 321 aaPredicted RBP13.25□□□□□ -0.29
CCDC40-209ENST00000573474 GGTA1PQ4G0N0 100 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 LIPJQ5W064 366 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 LCTLQ6UWM7 567 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 ACAD11Q709F0 780 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 TRIM48Q8IWZ4 208 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 DCBLD1Q8N8Z6 715 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 FAM46DQ8NEK8 389 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 OR52E1Q8NGJ3 308 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 OR2L8Q8NGY9 312 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 LMX1AQ8TE12 382 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 TWIST2Q8WVJ9 160 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 SH3KBP1Q96B97 665 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 CCT7Q99832 543 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 HAUS8Q9BT25 410 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 CCDC28BQ9BUN5 200 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 ABCF3Q9NUQ8 709 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 RNF11Q9Y3C5 154 aa13.25□□□□□ -0.29
CCDC40-209ENST00000573474 ATXN2Q99700 1313 aaKnown RBP13.24□□□□□ -0.29
CCDC40-209ENST00000573474 THADAQ6YHU6 1953 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 PRAMEF33A0A0G2JMD5 474 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 CCT8L1PA6NM43 557 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 SDHDO14521 159 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 AQP9O43315 295 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 VIPP01282 170 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 JUNP05412 331 aaKnown RBP13.24□□□□□ -0.29
CCDC40-209ENST00000573474 SHMT2P34897 504 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 CASP2P42575 452 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 DPP6P42658 865 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 CHIT1Q13231 466 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 TUBB3Q13509 450 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 ANGPT1Q15389 498 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 ZSCAN26Q16670 478 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 KIF19Q2TAC6 998 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 XKR6Q5GH73 641 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 PRAMEF14Q5SWL7 426 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 THEMIS2Q5TEJ8 643 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 PRAMEF13Q5VWM6 474 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 FOXR1Q6PIV2 292 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 SUSD1Q6UWL2 747 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 C6orf89Q6UWU4 347 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 SLC9B2Q86UD5 537 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 SYT12Q8IV01 421 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 C2orf73Q8N5S3 287 aaPredicted RBP13.24□□□□□ -0.29
CCDC40-209ENST00000573474 LMNTD1Q8N9Z9 388 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 ZBTB44Q8NCP5 570 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 ACTRT2Q8TDY3 377 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 ZDHHC1Q8WTX9 485 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 LCN9Q8WX39 176 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 CCT6BQ92526 530 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 C19orf60Q96EN9 201 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 MAELQ96JY0 434 aaKnown RBP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms