RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 RBSNQ9H1K0 784 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 TSPAN10Q9H1Z9 355 aaPredicted RBP10.6□□□□□ -0.71
VPS53-207ENST00000570510 ASB8Q9H765 288 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 SLC24A3Q9HC58 644 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 ZNF282Q9UDV7 671 aaPredicted RBP10.6□□□□□ -0.71
VPS53-207ENST00000570510 CRLS1Q9UJA2 301 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 NPIPA1Q9UND3 350 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 TDRKHQ9Y2W6 561 aaKnown RBP10.6□□□□□ -0.71
VPS53-207ENST00000570510 MAU2Q9Y6X3 613 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 DOCK10Q96BY6 2186 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 DNHD1Q96M86 4753 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 PCM1Q15154 2024 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 E9PLN8 166 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 ZNF189O75820 626 aaPredicted RBP10.59□□□□□ -0.71
VPS53-207ENST00000570510 CHRM5P08912 532 aaPredicted RBP10.59□□□□□ -0.71
VPS53-207ENST00000570510 ICAM2P13598 275 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 DNASE1P24855 282 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 SOX11P35716 441 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 GABRA4P48169 554 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 DGKQP52824 942 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 CACNG1Q06432 222 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 PPIDQ08752 370 aaKnown RBP10.59□□□□□ -0.71
VPS53-207ENST00000570510 ZC3H12BQ5HYM0 836 aaKnown RBP10.59□□□□□ -0.71
VPS53-207ENST00000570510 TCTE1Q5JU00 501 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 YOD1Q5VVQ6 348 aaPredicted RBP10.59□□□□□ -0.71
VPS53-207ENST00000570510 UNC5AQ6ZN44 842 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 Q6ZPB1 254 aaPredicted RBP10.59□□□□□ -0.71
VPS53-207ENST00000570510 RIPOR1Q6ZS17 1223 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 BIVMQ86UB2 503 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 DNAJC22Q8N4W6 341 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 SLC35G2Q8TBE7 412 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 PHF10Q8WUB8 498 aaKnown RBP10.59□□□□□ -0.71
VPS53-207ENST00000570510 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.59□□□□□ -0.71
VPS53-207ENST00000570510 NINJ1Q92982 152 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 FAF2Q96CS3 445 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 BTBD6Q96KE9 485 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 CHP1Q99653 195 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 VKORC1Q9BQB6 163 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 TMEM121Q9BTD3 319 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 RNF32Q9H0A6 362 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 CXXC4Q9H2H0 198 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 KCNJ16Q9NPI9 418 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 RIC8BQ9NVN3 520 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 SMOXQ9NWM0 555 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 DDX56Q9NY93 547 aaKnown RBP10.59□□□□□ -0.71
VPS53-207ENST00000570510 OR6C2Q9NZP2 312 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 IL17CQ9P0M4 197 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.59□□□□□ -0.71
VPS53-207ENST00000570510 ZNF835Q9Y2P0 537 aa10.59□□□□□ -0.71
VPS53-207ENST00000570510 ANKRD12Q6UB98 2062 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 A8MUI8 341 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 PPP1R12AO14974 1030 aaPredicted RBP10.58□□□□□ -0.72
VPS53-207ENST00000570510 ZGLP1P0C6A0 271 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 ZFXP17010 805 aaPredicted RBP10.58□□□□□ -0.72
VPS53-207ENST00000570510 EEF1DP29692 281 aaKnown RBP10.58□□□□□ -0.72
VPS53-207ENST00000570510 ADSLP30566 484 aaPredicted RBP10.58□□□□□ -0.72
VPS53-207ENST00000570510 ARSEP51690 589 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 EEF1A2Q05639 463 aaKnown RBP10.58□□□□□ -0.72
VPS53-207ENST00000570510 SLC10A2Q12908 348 aaPredicted RBP10.58□□□□□ -0.72
VPS53-207ENST00000570510 OLIG2Q13516 323 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 PCOLCEQ15113 449 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 PDK1Q15118 436 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 SLC14A2Q15849 920 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 FAM182AQ5T1J6 154 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 BZW1Q7L1Q6 419 aaKnown RBP10.58□□□□□ -0.72
VPS53-207ENST00000570510 GHDCQ8N2G8 530 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 FAM98AQ8NCA5 519 aaKnown RBP10.58□□□□□ -0.72
VPS53-207ENST00000570510 STT3BQ8TCJ2 826 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 ASB5Q8WWX0 329 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 PSMF1Q92530 271 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 MAK16Q9BXY0 300 aaKnown RBP10.58□□□□□ -0.72
VPS53-207ENST00000570510 COG4Q9H9E3 785 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 GLOD4Q9HC38 313 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 ZNF304Q9HCX3 659 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 KLHL1Q9NR64 748 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 INTS7Q9NVH2 962 aaKnown RBP10.58□□□□□ -0.72
VPS53-207ENST00000570510 DNAJB12Q9NXW2 375 aaKnown RBP10.58□□□□□ -0.72
VPS53-207ENST00000570510 SPHK1Q9NYA1 384 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 KCNN3Q9UGI6 736 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 FAM153AQ9UHL3 310 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 POLG2Q9UHN1 485 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 ICKQ9UPZ9 632 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 ASF1AQ9Y294 204 aa10.58□□□□□ -0.72
VPS53-207ENST00000570510 PRRC2AP48634 2157 aaKnown RBP10.58□□□□□ -0.72
VPS53-207ENST00000570510 MAP1AP78559 2803 aaPredicted RBP10.57□□□□□ -0.72
VPS53-207ENST00000570510 CACNA1CQ13936 2221 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 C2orf81A6NN90 581 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 FAM90A27PA6NNH2 459 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 RASGRF2O14827 1237 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 PSTPIP1O43586 416 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 ASNA1O43681 348 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 SRP72O76094 671 aaKnown RBP10.57□□□□□ -0.72
VPS53-207ENST00000570510 SLCO2B1O94956 709 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 HEXBP07686 556 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 ATP1B2P14415 290 aaPredicted RBP10.57□□□□□ -0.72
VPS53-207ENST00000570510 MAGP20916 626 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 PDHA2P29803 388 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 MAGEA1P43355 309 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 PRLHRP49683 370 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 MEOX1P50221 254 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms