RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 AMER2Q8N7J2 671 aa15.44■□□□□ 0.06
CLK3-223ENST00000568488 AGAP11Q8TF27 550 aa15.44■□□□□ 0.06
CLK3-223ENST00000568488 THAP3Q8WTV1 239 aaPredicted RBP15.44■□□□□ 0.06
CLK3-223ENST00000568488 TREX2Q9BQ50 279 aaPredicted RBP15.44■□□□□ 0.06
CLK3-223ENST00000568488 SELENOSQ9BQE4 189 aa15.44■□□□□ 0.06
CLK3-223ENST00000568488 YIPF2Q9BWQ6 316 aa15.44■□□□□ 0.06
CLK3-223ENST00000568488 FSD1LQ9BXM9 530 aa15.44■□□□□ 0.06
CLK3-223ENST00000568488 COQ3Q9NZJ6 369 aa15.44■□□□□ 0.06
CLK3-223ENST00000568488 CTTNBP2NLQ9P2B4 639 aa15.44■□□□□ 0.06
CLK3-223ENST00000568488 ZNF282Q9UDV7 671 aaPredicted RBP15.44■□□□□ 0.06
CLK3-223ENST00000568488 NPIPA1Q9UND3 350 aa15.44■□□□□ 0.06
CLK3-223ENST00000568488 AGTP01019 485 aa15.43■□□□□ 0.06
CLK3-223ENST00000568488 ZFXP17010 805 aaPredicted RBP15.43■□□□□ 0.06
CLK3-223ENST00000568488 ITGALP20701 1170 aa15.43■□□□□ 0.06
CLK3-223ENST00000568488 OLIG2Q13516 323 aa15.43■□□□□ 0.06
CLK3-223ENST00000568488 TAF1AQ15573 450 aaPredicted RBP15.43■□□□□ 0.06
CLK3-223ENST00000568488 ZNF658BQ4V348 819 aaPredicted RBP15.43■□□□□ 0.06
CLK3-223ENST00000568488 ZC3H12BQ5HYM0 836 aaKnown RBP15.43■□□□□ 0.06
CLK3-223ENST00000568488 NEK10Q6ZWH5 1172 aa15.43■□□□□ 0.06
CLK3-223ENST00000568488 CLDN19Q8N6F1 224 aa15.43■□□□□ 0.06
CLK3-223ENST00000568488 OR13C4Q8NGS5 318 aa15.43■□□□□ 0.06
CLK3-223ENST00000568488 ZNF559Q9BR84 538 aa15.43■□□□□ 0.06
CLK3-223ENST00000568488 RNF32Q9H0A6 362 aa15.43■□□□□ 0.06
CLK3-223ENST00000568488 CCM2LQ9NUG4 571 aaPredicted RBP15.43■□□□□ 0.06
CLK3-223ENST00000568488 ZDHHC3Q9NYG2 299 aa15.43■□□□□ 0.06
CLK3-223ENST00000568488 PPT2Q9UMR5 302 aa15.43■□□□□ 0.06
CLK3-223ENST00000568488 LUC7L2Q9Y383 392 aaKnown RBP15.43■□□□□ 0.06
CLK3-223ENST00000568488 IGHV1-45A0A0A0MS14 117 aa15.42■□□□□ 0.06
CLK3-223ENST00000568488 HYKKA2RU49 373 aa15.42■□□□□ 0.06
CLK3-223ENST00000568488 AGAP14A8MT82 685 aa15.42■□□□□ 0.06
CLK3-223ENST00000568488 A8MUI8 341 aa15.42■□□□□ 0.06
CLK3-223ENST00000568488 TTI1O43156 1089 aa15.42■□□□□ 0.06
CLK3-223ENST00000568488 WASHC5Q12768 1159 aa15.42■□□□□ 0.06
CLK3-223ENST00000568488 MPP3Q13368 585 aa15.42■□□□□ 0.06
CLK3-223ENST00000568488 WASHC2DQ5SRD0 308 aa15.42■□□□□ 0.06
CLK3-223ENST00000568488 FIGLAQ6QHK4 219 aa15.42■□□□□ 0.06
CLK3-223ENST00000568488 RIPOR1Q6ZS17 1223 aa15.42■□□□□ 0.06
CLK3-223ENST00000568488 SNX20Q7Z614 316 aa15.42■□□□□ 0.06
CLK3-223ENST00000568488 TAB3Q8N5C8 712 aaPredicted RBP15.42■□□□□ 0.06
CLK3-223ENST00000568488 LMNTD1Q8N9Z9 388 aa15.42■□□□□ 0.06
CLK3-223ENST00000568488 TFB1MQ8WVM0 346 aaKnown RBP15.42■□□□□ 0.06
CLK3-223ENST00000568488 FCRL5Q96RD9 977 aa15.42■□□□□ 0.06
CLK3-223ENST00000568488 FOXC2Q99958 501 aa15.42■□□□□ 0.06
CLK3-223ENST00000568488 FICDQ9BVA6 458 aa15.42■□□□□ 0.06
CLK3-223ENST00000568488 KLHL1Q9NR64 748 aa15.42■□□□□ 0.06
CLK3-223ENST00000568488 INTS7Q9NVH2 962 aaKnown RBP15.42■□□□□ 0.06
CLK3-223ENST00000568488 RIC8BQ9NVN3 520 aa15.42■□□□□ 0.06
CLK3-223ENST00000568488 STOX2Q9P2F5 926 aaPredicted RBP15.42■□□□□ 0.06
CLK3-223ENST00000568488 SAE1Q9UBE0 346 aaPredicted RBP15.42■□□□□ 0.06
CLK3-223ENST00000568488 ACANP16112 2415 aa15.41■□□□□ 0.06
CLK3-223ENST00000568488 FOXO6A8MYZ6 492 aa15.41■□□□□ 0.06
CLK3-223ENST00000568488 IDSB3KWA1 339 aa15.41■□□□□ 0.06
CLK3-223ENST00000568488 CCL22O00626 93 aa15.41■□□□□ 0.06
CLK3-223ENST00000568488 KDM1AO60341 852 aa15.41■□□□□ 0.06
CLK3-223ENST00000568488 CDKN1CP49918 316 aaPredicted RBP15.41■□□□□ 0.06
CLK3-223ENST00000568488 VSX2P58304 361 aaPredicted RBP15.41■□□□□ 0.06
CLK3-223ENST00000568488 FOXD4Q12950 439 aaPredicted RBP15.41■□□□□ 0.06
CLK3-223ENST00000568488 ODF2Q5BJF6 829 aa15.41■□□□□ 0.06
CLK3-223ENST00000568488 NAPRTQ6XQN6 538 aa15.41■□□□□ 0.06
CLK3-223ENST00000568488 TAOK1Q7L7X3 1001 aa15.41■□□□□ 0.06
CLK3-223ENST00000568488 TAS2R42Q7RTR8 314 aa15.41■□□□□ 0.06
CLK3-223ENST00000568488 TAX1BP1Q86VP1 789 aa15.41■□□□□ 0.06
CLK3-223ENST00000568488 SERPINA9Q86WD7 417 aa15.41■□□□□ 0.06
CLK3-223ENST00000568488 DOLPP1Q86YN1 238 aa15.41■□□□□ 0.06
CLK3-223ENST00000568488 OR5K2Q8NHB8 316 aa15.41■□□□□ 0.06
CLK3-223ENST00000568488 PHF10Q8WUB8 498 aaKnown RBP15.41■□□□□ 0.06
CLK3-223ENST00000568488 RNF25Q96BH1 459 aaPredicted RBP15.41■□□□□ 0.06
CLK3-223ENST00000568488 RTN4Q9NQC3 1192 aaKnown RBP15.41■□□□□ 0.06
CLK3-223ENST00000568488 CHMP5Q9NZZ3 219 aa15.41■□□□□ 0.06
CLK3-223ENST00000568488 ZC3H7BQ9UGR2 993 aaKnown RBP15.41■□□□□ 0.06
CLK3-223ENST00000568488 TEKT2Q9UIF3 430 aa15.41■□□□□ 0.06
CLK3-223ENST00000568488 SNRNP200O75643 2136 aaKnown RBP15.41■□□□□ 0.06
CLK3-223ENST00000568488 A0A087X0T9 212 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 C5orf60A6NFR6 353 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 E9PLN8 166 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 PRRG2O14669 202 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 LIN7AO14910 233 aaPredicted RBP15.4■□□□□ 0.06
CLK3-223ENST00000568488 SLCO2B1O94956 709 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 MED26O95402 600 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 AP2A1O95782 977 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 TSPAN12O95859 305 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 EIF2S1P05198 315 aaKnown RBP15.4■□□□□ 0.06
CLK3-223ENST00000568488 HEXBP07686 556 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 FAM228BP0C875 321 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 FBLP22087 321 aaKnown RBP15.4■□□□□ 0.06
CLK3-223ENST00000568488 ACADLP28330 430 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 MC4RP32245 332 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 ARHGAP25P42331 645 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 ST13P50502 369 aaKnown RBP15.4■□□□□ 0.06
CLK3-223ENST00000568488 SF1Q15637 639 aaKnown RBP15.4■□□□□ 0.06
CLK3-223ENST00000568488 CES4AQ5XG92 561 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 MICALCLQ6ZW33 695 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 ZNF567Q8N184 647 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 ELMO1Q92556 727 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 VKORC1Q9BQB6 163 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 APOL2Q9BQE5 337 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 HES7Q9BYE0 225 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 CXXC4Q9H2H0 198 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 CIDEBQ9UHD4 219 aa15.4■□□□□ 0.06
CLK3-223ENST00000568488 RSPH14Q9UHP6 348 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms