RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 EPGNQ6UW88 154 aa29.63■■■□□ 2.33
CTCF-203ENST00000566078 CDYL2Q8N8U2 506 aa29.63■■■□□ 2.33
CTCF-203ENST00000566078 OR52E1Q8NGJ3 308 aa29.63■■■□□ 2.33
CTCF-203ENST00000566078 OR4K3Q96R72 315 aa29.63■■■□□ 2.33
CTCF-203ENST00000566078 SGPP1Q9BX95 441 aa29.63■■■□□ 2.33
CTCF-203ENST00000566078 STN1Q9H668 368 aaKnown RBP29.63■■■□□ 2.33
CTCF-203ENST00000566078 TMEM74BQ9NUR3 256 aa29.63■■■□□ 2.33
CTCF-203ENST00000566078 SUSD2Q9UGT4 822 aa29.63■■■□□ 2.33
CTCF-203ENST00000566078 ZNF839A8K0R7 811 aa29.62■■■□□ 2.33
CTCF-203ENST00000566078 UROSP10746 265 aa29.62■■■□□ 2.33
CTCF-203ENST00000566078 CYP2A13Q16696 494 aa29.62■■■□□ 2.33
CTCF-203ENST00000566078 SLC9B1Q4ZJI4 515 aa29.62■■■□□ 2.33
CTCF-203ENST00000566078 SUSD1Q6UWL2 747 aa29.62■■■□□ 2.33
CTCF-203ENST00000566078 C2orf73Q8N5S3 287 aaPredicted RBP29.62■■■□□ 2.33
CTCF-203ENST00000566078 LMX1AQ8TE12 382 aa29.62■■■□□ 2.33
CTCF-203ENST00000566078 PLCD4Q9BRC7 762 aa29.62■■■□□ 2.33
CTCF-203ENST00000566078 SPASTQ9UBP0 616 aa29.62■■■□□ 2.33
CTCF-203ENST00000566078 PILRBQ9UKJ0 227 aa29.62■■■□□ 2.33
CTCF-203ENST00000566078 TIMM22Q9Y584 194 aa29.62■■■□□ 2.33
CTCF-203ENST00000566078 TRPC5OSA6NMA1 111 aa29.61■■■□□ 2.33
CTCF-203ENST00000566078 EBLN1P0CF75 366 aa29.61■■■□□ 2.33
CTCF-203ENST00000566078 SLC19A1P41440 591 aa29.61■■■□□ 2.33
CTCF-203ENST00000566078 RAB28P51157 221 aa29.61■■■□□ 2.33
CTCF-203ENST00000566078 HNRNPKP61978 463 aaKnown RBP eCLIP29.61■■■□□ 2.33
CTCF-203ENST00000566078 BTKQ06187 659 aa29.61■■■□□ 2.33
CTCF-203ENST00000566078 UGT3A2Q3SY77 523 aa29.61■■■□□ 2.33
CTCF-203ENST00000566078 PRAMEF14Q5SWL7 426 aa29.61■■■□□ 2.33
CTCF-203ENST00000566078 IYDQ6PHW0 289 aa29.61■■■□□ 2.33
CTCF-203ENST00000566078 TWIST2Q8WVJ9 160 aa29.61■■■□□ 2.33
CTCF-203ENST00000566078 PATE1Q8WXA2 126 aa29.61■■■□□ 2.33
CTCF-203ENST00000566078 ZC3H10Q96K80 434 aaKnown RBP29.61■■■□□ 2.33
CTCF-203ENST00000566078 RAB11FIP5Q9BXF6 653 aa29.61■■■□□ 2.33
CTCF-203ENST00000566078 NUSAP1Q9BXS6 441 aaKnown RBP29.61■■■□□ 2.33
CTCF-203ENST00000566078 KIR3DX1Q9H7L2 352 aa29.61■■■□□ 2.33
CTCF-203ENST00000566078 ACTR8Q9H981 624 aa29.61■■■□□ 2.33
CTCF-203ENST00000566078 DNAJC15Q9Y5T4 150 aa29.61■■■□□ 2.33
CTCF-203ENST00000566078 SNRNP200O75643 2136 aaKnown RBP29.61■■■□□ 2.33
CTCF-203ENST00000566078 FAM86C2PA6NEL3 165 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 KDM1AO60341 852 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 ENO1P06733 434 aaKnown RBP29.6■■■□□ 2.33
CTCF-203ENST00000566078 HGFP14210 728 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 CCND1P24385 295 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 PKLRP30613 574 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 MYLK4Q86YV6 388 aaPredicted RBP29.6■■■□□ 2.33
CTCF-203ENST00000566078 TRIM48Q8IWZ4 208 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 RILPQ96NA2 401 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 XKR8Q9H6D3 395 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 TRPS1Q9UHF7 1281 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 ICKQ9UPZ9 632 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 APOBEC2Q9Y235 224 aaKnown RBP29.6■■■□□ 2.33
CTCF-203ENST00000566078 RNF11Q9Y3C5 154 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 CLDN9O95484 217 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 CAPN1P07384 714 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 SLC2A4P14672 509 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 THEMIS2Q5TEJ8 643 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 FOXR1Q6PIV2 292 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 GKN2Q86XP6 184 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 ZNF548Q8NEK5 533 aaPredicted RBP29.6■■■□□ 2.33
CTCF-203ENST00000566078 FAM46DQ8NEK8 389 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 METTL6Q8TCB7 284 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 ZDHHC1Q8WTX9 485 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 PIGKQ92643 395 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 DYRK1BQ9Y463 629 aa29.6■■■□□ 2.33
CTCF-203ENST00000566078 DNAH14Q0VDD8 3507 aa29.59■■■□□ 2.33
CTCF-203ENST00000566078 E7EQ34 232 aa29.59■■■□□ 2.33
CTCF-203ENST00000566078 CTSKP43235 329 aa29.59■■■□□ 2.33
CTCF-203ENST00000566078 KIF19Q2TAC6 998 aa29.59■■■□□ 2.33
CTCF-203ENST00000566078 PRAMEF13Q5VWM6 474 aa29.59■■■□□ 2.33
CTCF-203ENST00000566078 EFL1Q7Z2Z2 1120 aaKnown RBP29.59■■■□□ 2.33
CTCF-203ENST00000566078 MIPEPQ99797 713 aa29.59■■■□□ 2.33
CTCF-203ENST00000566078 HEY2Q9UBP5 337 aa29.59■■■□□ 2.33
CTCF-203ENST00000566078 DOLKQ9UPQ8 538 aa29.59■■■□□ 2.33
CTCF-203ENST00000566078 SNX11Q9Y5W9 270 aa29.59■■■□□ 2.33
CTCF-203ENST00000566078 KIR2DS5A0A0G2JLQ3 304 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 A0A0G2JNG1 304 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 GOLGA8QA0A0J9YX86 632 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 GOLGA8OA6NCC3 632 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 OR5K4A6NMS3 321 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 B4DGG1 531 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 GOLGA8NF8WBI6 632 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 KIR2DS3K7RE56 304 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 HGSO14964 777 aaPredicted RBP29.58■■■□□ 2.33
CTCF-203ENST00000566078 CLGNO14967 610 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 AQP9O43315 295 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 CHEK2O96017 543 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 HMOX2P30519 316 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 CHIT1Q13231 466 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 KIR2DS5Q14953 304 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 TCHHL1Q5QJ38 904 aaPredicted RBP29.58■■■□□ 2.33
CTCF-203ENST00000566078 SFTPA2Q8IWL1 248 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 NAGSQ8N159 534 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 LINC01555Q8NAE3 123 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 ZBTB44Q8NCP5 570 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 JPH3Q8WXH2 748 aaPredicted RBP29.58■■■□□ 2.33
CTCF-203ENST00000566078 SMPDL3AQ92484 453 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 WDR55Q9H6Y2 383 aaPredicted RBP29.58■■■□□ 2.33
CTCF-203ENST00000566078 MEAF6Q9HAF1 191 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 GPRC5BQ9NZH0 403 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 BTRCQ9Y297 605 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 KCNE2Q9Y6J6 123 aa29.58■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms