RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 ETV5P41161 510 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 TUBB3Q13509 450 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 FAM153CQ494X1 144 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 FBXO38Q6PIJ6 1188 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 TMEM207Q6UWW9 146 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 C19orf47Q8N9M1 422 aaKnown RBP12.55□□□□□ -0.4
NEDD8-208ENST00000560427 LMNTD1Q8N9Z9 388 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 ZNF248Q8NDW4 579 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 ZNF480Q8WV37 535 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 ATL1Q8WXF7 558 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 DLG3Q92796 817 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 TRAPPC9Q96Q05 1148 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 PAFAH2Q99487 392 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 PCBD2Q9H0N5 130 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 ADAMTS6Q9UKP5 1117 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 PDE10AQ9Y233 779 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 A0A087X1B8 175 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 EXOC1LA0A1B0GW35 172 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 A0A1W2PPV9 198 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 SLC9B1P1A6NJY1 282 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 E7ENX8 843 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 STMND1H3BQB6 276 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 PRAMEF10O60809 474 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 FAM155BO75949 473 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 KRT38O76015 456 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 TUBBP07437 444 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 IMPA1P29218 277 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 SLC5A2P31639 672 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 MSH2P43246 934 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 SERPINB8P50452 374 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 ABATP80404 500 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 CDKL1Q00532 357 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 TAP2Q03519 686 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 FOXM1Q08050 763 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 ZNF460Q14592 562 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 PPP1R3AQ16821 1122 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.54□□□□□ -0.4
NEDD8-208ENST00000560427 UBAP2Q5T6F2 1119 aaKnown RBP12.54□□□□□ -0.4
NEDD8-208ENST00000560427 LGSNQ5TDP6 509 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 SBSNQ6UWP8 590 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 RAPH1Q70E73 1250 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 TBC1D1Q86TI0 1168 aaPredicted RBP12.54□□□□□ -0.4
NEDD8-208ENST00000560427 PPP1R3BQ86XI6 285 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 GSPT2Q8IYD1 628 aaKnown RBP12.54□□□□□ -0.4
NEDD8-208ENST00000560427 SYTL1Q8IYJ3 562 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 ISL2Q96A47 359 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 ZUFSPQ96AP4 578 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 UBXN10Q96LJ8 280 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 CNTNAP3BQ96NU0 1288 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 OR6C1Q96RD1 312 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 NRTNQ99748 197 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 CNTNAP3Q9BZ76 1288 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 CAB39LQ9H9S4 337 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 PPCSQ9HAB8 311 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 FGF21Q9NSA1 209 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 ARL15Q9NXU5 204 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 STOX2Q9P2F5 926 aaPredicted RBP12.54□□□□□ -0.4
NEDD8-208ENST00000560427 ANKMY1Q9P2S6 941 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 CTNNAL1Q9UBT7 734 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 CIDEBQ9UHD4 219 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 RARRES3Q9UL19 164 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 OARD1Q9Y530 152 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 IGF2RP11717 2491 aa12.54□□□□□ -0.4
NEDD8-208ENST00000560427 ADAMTS20P59510 1910 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 TARM1B6A8C7 271 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 RRP8O43159 456 aaKnown RBP12.53□□□□□ -0.4
NEDD8-208ENST00000560427 PHGDHO43175 533 aaKnown RBP12.53□□□□□ -0.4
NEDD8-208ENST00000560427 KRT37O76014 449 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 EBLN1P0CF75 366 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 SLC35E2BP0CK96 405 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 MYBL2P10244 700 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 LIPCP11150 499 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 FOLR1P15328 257 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 CMPK1P30085 196 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 RPA3P35244 121 aaPredicted RBP12.53□□□□□ -0.4
NEDD8-208ENST00000560427 HNMTP50135 292 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 CSRP3P50461 194 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 SH3BP2P78314 561 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 MAP7Q14244 749 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 SF1Q15637 639 aaKnown RBP12.53□□□□□ -0.4
NEDD8-208ENST00000560427 UAP1Q16222 522 aaPredicted RBP12.53□□□□□ -0.4
NEDD8-208ENST00000560427 PHKG1Q16816 387 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 TAF1BQ53T94 588 aaPredicted RBP12.53□□□□□ -0.4
NEDD8-208ENST00000560427 CDKL4Q5MAI5 379 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 EMBQ6PCB8 327 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 FRA10AC1Q70Z53 315 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 TAX1BP1Q86VP1 789 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 LRRC56Q8IYG6 542 aaPredicted RBP12.53□□□□□ -0.4
NEDD8-208ENST00000560427 OR2L3Q8NG85 312 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 OR2A1Q8NGT9 310 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 ANKRD49Q8WVL7 239 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 FBXL8Q96CD0 374 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 MTBPQ96DY7 904 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 PPM1MQ96MI6 270 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 CCDC77Q9BR77 488 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 DHRS4Q9BTZ2 278 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 DPH1Q9BZG8 443 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 CCDC177Q9NQR7 707 aaPredicted RBP12.53□□□□□ -0.4
NEDD8-208ENST00000560427 SNX15Q9NRS6 342 aa12.53□□□□□ -0.4
NEDD8-208ENST00000560427 UTP6Q9NYH9 597 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms