RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 KLHL3Q9UH77 587 aa9.75□□□□□ -0.85
USP3-216ENST00000559873 CIDEBQ9UHD4 219 aa9.75□□□□□ -0.85
USP3-216ENST00000559873 LGALS13Q9UHV8 139 aa9.75□□□□□ -0.85
USP3-216ENST00000559873 PCDHB11Q9Y5F2 797 aa9.75□□□□□ -0.85
USP3-216ENST00000559873 UNC13CQ8NB66 2214 aa9.75□□□□□ -0.85
USP3-216ENST00000559873 KNTC1P50748 2209 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 NCOR2Q9Y618 2525 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 CCDC187A0A096LP49 1063 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 SUPT3HB4E1H0 165 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 E7ENX8 843 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 COPEO14579 308 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 RGS16O15492 202 aaPredicted RBP9.74□□□□□ -0.85
USP3-216ENST00000559873 SUPT3HO75486 399 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 RFPL1O75677 317 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 ZBTB11O95625 1053 aaPredicted RBP9.74□□□□□ -0.85
USP3-216ENST00000559873 GUCA1CO95843 209 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 UGT2B7P16662 529 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 PRDX3P30048 256 aaKnown RBP9.74□□□□□ -0.85
USP3-216ENST00000559873 CMPK1P30085 196 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 GLRBP48167 497 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 CCT5P48643 541 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 PDX1P52945 283 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 TBPL1P62380 186 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 ABATP80404 500 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 IRF9Q00978 393 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 TAP2Q03519 686 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 ZFP36L1Q07352 338 aaKnown RBP9.74□□□□□ -0.85
USP3-216ENST00000559873 ZNF844Q08AG5 666 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 TGFBIQ15582 683 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 SF1Q15637 639 aaKnown RBP9.74□□□□□ -0.85
USP3-216ENST00000559873 CEP85LQ5SZL2 805 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 TMTC4Q5T4D3 741 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 SULT1C3Q6IMI6 304 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 AGTRAPQ6RW13 159 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 FAM92BQ6ZTR7 304 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 CLEC14AQ86T13 490 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 TAX1BP1Q86VP1 789 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 SPATA6LQ8N4H0 392 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 LINC01555Q8NAE3 123 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 WDR36Q8NI36 951 aaKnown RBP9.74□□□□□ -0.85
USP3-216ENST00000559873 DENND1AQ8TEH3 1009 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 MZB1Q8WU39 189 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 DLG3Q92796 817 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 EXT2Q93063 718 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 NXNL1Q96CM4 212 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 MED8Q96G25 268 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 SMC6Q96SB8 1091 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 MIPEPQ99797 713 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 MRPL57Q9BQC6 102 aaKnown RBP9.74□□□□□ -0.85
USP3-216ENST00000559873 HAUS8Q9BT25 410 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 PITPNM3Q9BZ71 974 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 UNKQ9C0B0 810 aaKnown RBP9.74□□□□□ -0.85
USP3-216ENST00000559873 MRPL46Q9H2W6 279 aaKnown RBP9.74□□□□□ -0.85
USP3-216ENST00000559873 ZNF768Q9H5H4 540 aaKnown RBP9.74□□□□□ -0.85
USP3-216ENST00000559873 FANCEQ9HB96 536 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 SOHLH2Q9NX45 425 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 CD274Q9NZQ7 290 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 PDP2Q9P2J9 529 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 XPR1Q9UBH6 696 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 DCDC2Q9UHG0 476 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 MID2Q9UJV3 735 aa9.74□□□□□ -0.85
USP3-216ENST00000559873 UQCRHLA0A096LP55 91 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 NCF1BA6NI72 391 aaPredicted RBP9.73□□□□□ -0.85
USP3-216ENST00000559873 NCF1CA8MVU1 366 aaPredicted RBP9.73□□□□□ -0.85
USP3-216ENST00000559873 HYAL3O43820 417 aaPredicted RBP9.73□□□□□ -0.85
USP3-216ENST00000559873 SMIM24O75264 130 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 UQCRHP07919 91 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 ADRB1P08588 477 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 JMJD7P0C870 316 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 TPBGLP0DKB5 382 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 PYGBP11216 843 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 GFAPP14136 432 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 NCF1P14598 390 aaPredicted RBP9.73□□□□□ -0.85
USP3-216ENST00000559873 H2AFXP16104 143 aaPredicted RBP9.73□□□□□ -0.85
USP3-216ENST00000559873 TAC1P20366 129 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 HSD11B2P80365 405 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 CFHR1Q03591 330 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 DLG1Q12959 904 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 TARDBPQ13148 414 aaKnown RBP eCLIP9.73□□□□□ -0.85
USP3-216ENST00000559873 CASP8Q14790 479 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 OR4D1Q15615 310 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 TECRLQ5HYJ1 363 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 PRAMEF13Q5VWM6 474 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 HDXQ7Z353 690 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 ARHGAP22Q7Z5H3 698 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 B3GNT8Q7Z7M8 397 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 ISCA2Q86U28 154 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 CHCHD4Q8N4Q1 142 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 GOLGA6L1Q8N7Z2 621 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 PDPRQ8NCN5 879 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 ALKBH8Q96BT7 664 aaKnown RBP9.73□□□□□ -0.85
USP3-216ENST00000559873 PTERQ96BW5 349 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 NXPE2Q96DL1 559 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 ZIM3Q96PE6 472 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 MAP3K3Q99759 626 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 ACBD3Q9H3P7 528 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 CENPHQ9H3R5 247 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 SEMA6CQ9H3T2 930 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 TMEM9Q9P0T7 183 aa9.73□□□□□ -0.85
USP3-216ENST00000559873 ANKMY1Q9P2S6 941 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms