RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 PDK2Q15119 407 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 IRF4Q15306 451 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 CNGA3Q16281 694 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 HADHQ16836 314 aaKnown RBP4.21□□□□□ -1.74
SPG11-211ENST00000558561 LCE5AQ5TCM9 118 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 MARC1Q5VT66 337 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 NAPEPLDQ6IQ20 393 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 DARS2Q6PI48 645 aaKnown RBP4.21□□□□□ -1.74
SPG11-211ENST00000558561 ENPP7Q6UWV6 458 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 DHRS13Q6UX07 377 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 ZNF627Q7L945 461 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 PPP1R32Q7Z5V6 425 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 TECPR1Q7Z6L1 1165 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 CLNKQ7Z7G1 428 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 TRIM74Q86UV6 250 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 NT5DC3Q86UY8 548 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 TMTC1Q8IUR5 882 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 CNGA4Q8IV77 575 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 CCDC50Q8IVM0 306 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 NAXDQ8IW45 347 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 LRRC57Q8N9N7 239 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 GLIS1Q8NBF1 620 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 PSD4Q8NDX1 1056 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 POC1BQ8TC44 478 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 ASB10Q8WXI3 467 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 RFFLQ8WZ73 363 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 OR1E3Q8WZA6 343 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 TMEM125Q96AQ2 219 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 IQCDQ96DY2 449 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 OXNAD1Q96HP4 312 aaPredicted RBP4.21□□□□□ -1.74
SPG11-211ENST00000558561 COQ10AQ96MF6 247 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 TSGA13Q96PP4 275 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 NUDCD1Q96RS6 583 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 IL12RB2Q99665 862 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 BAG1Q99933 345 aaPredicted RBP4.21□□□□□ -1.74
SPG11-211ENST00000558561 APOL2Q9BQE5 337 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 MGME1Q9BQP7 344 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 APOOQ9BUR5 198 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 CNPPD1Q9BV87 410 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 CINPQ9BW66 212 aaPredicted RBP4.21□□□□□ -1.74
SPG11-211ENST00000558561 TRIM54Q9BYV2 358 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 RETREG1Q9H6L5 497 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 SUDS3Q9H7L9 328 aaPredicted RBP4.21□□□□□ -1.74
SPG11-211ENST00000558561 USP29Q9HBJ7 922 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 PREBQ9HCU5 417 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 SEPT10Q9P0V9 454 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 CPNE7Q9UBL6 633 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 DKK3Q9UBP4 350 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 SHOC2Q9UQ13 582 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 MED16Q9Y2X0 877 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 TTLL3Q9Y4R7 772 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 COL27A1Q8IZC6 1860 aaPredicted RBP4.21□□□□□ -1.74
SPG11-211ENST00000558561 SCN8AQ9UQD0 1980 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 CHD8Q9HCK8 2581 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 URB1O60287 2271 aaKnown RBP4.2□□□□□ -1.74
SPG11-211ENST00000558561 ZFC3H1O60293 1989 aaKnown RBP4.2□□□□□ -1.74
SPG11-211ENST00000558561 ASPMQ8IZT6 3477 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 SPTY2D1-AS1A0A0U1RR47 76 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 ZSCAN5CA6NGD5 496 aaPredicted RBP4.2□□□□□ -1.74
SPG11-211ENST00000558561 BTN3A1O00481 513 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 CCL22O00626 93 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 TOR1BO14657 336 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 APOL1O14791 398 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 YY2O15391 372 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 SLC7A4O43246 635 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 SPOPO43791 374 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 UGT1A9O60656 530 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 FZD7O75084 574 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 PMPCBO75439 489 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 PIAS2O75928 621 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 HEXIM1O94992 359 aaKnown RBP4.2□□□□□ -1.74
SPG11-211ENST00000558561 PGLSO95336 258 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 EML2O95834 649 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 SOD1P00441 154 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 TPM3P06753 285 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 GRPP07492 148 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 ADH4P08319 380 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 KRT7P08729 469 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 TPM1P09493 284 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 PRSS56P0CW18 603 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 ITGAMP11215 1152 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 TSHRP16473 764 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 TPH1P17752 444 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 UGT1A6P19224 532 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 UGT1A1P22309 533 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 UGT1A4P22310 534 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 HNRNPA2B1P22626 353 aaKnown RBP4.2□□□□□ -1.74
SPG11-211ENST00000558561 AK4P27144 223 aaPredicted RBP4.2□□□□□ -1.74
SPG11-211ENST00000558561 PEX2P28328 305 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 EPHA8P29322 1005 aaPredicted RBP4.2□□□□□ -1.74
SPG11-211ENST00000558561 MAN1A1P33908 653 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 UGT1A3P35503 534 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 UGT1A5P35504 534 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 MMP12P39900 470 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 ANXA11P50995 505 aaKnown RBP4.2□□□□□ -1.74
SPG11-211ENST00000558561 HADHBP55084 474 aaKnown RBP4.2□□□□□ -1.74
SPG11-211ENST00000558561 NAP1L1P55209 391 aaKnown RBP4.2□□□□□ -1.74
SPG11-211ENST00000558561 SUMO3P55854 103 aaPredicted RBP4.2□□□□□ -1.74
SPG11-211ENST00000558561 UCP3P55916 312 aa4.2□□□□□ -1.74
SPG11-211ENST00000558561 RPS7P62081 194 aaKnown RBP4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms