RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 CYP2A7P20853 494 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 TIAL1Q01085 375 aaKnown RBP eCLIP12.04□□□□□ -0.48
SLIRP-209ENST00000557342 SP140Q13342 867 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 PWWP2BQ6NUJ5 590 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 INO80CQ6PI98 192 aaPredicted RBP12.04□□□□□ -0.48
SLIRP-209ENST00000557342 UBE2R2Q712K3 238 aaPredicted RBP12.04□□□□□ -0.48
SLIRP-209ENST00000557342 PIWIL4Q7Z3Z4 852 aaKnown RBP12.04□□□□□ -0.48
SLIRP-209ENST00000557342 TRIM73Q86UV7 250 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 TAX1BP1Q86VP1 789 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 TMEM126BQ8IUX1 230 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 LMNTD1Q8N9Z9 388 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 MCOLN3Q8TDD5 553 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 DENND1AQ8TEH3 1009 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 EEF1AKMT1Q8WVE0 214 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 SNRNP27Q8WVK2 155 aaKnown RBP12.04□□□□□ -0.48
SLIRP-209ENST00000557342 SMPDL3AQ92484 453 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 LINGO1Q96FE5 620 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 VPS39Q96JC1 886 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 PKP4Q99569 1192 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 CPNE1Q99829 537 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 KLHL25Q9H0H3 589 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 RHOJQ9H4E5 214 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 CPNE5Q9HCH3 593 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 ZDHHC18Q9NUE0 388 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 PCDHB3Q9Y5E6 796 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 PSAT1Q9Y617 370 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 CACNA1BQ00975 2339 aa12.04□□□□□ -0.48
SLIRP-209ENST00000557342 HEATR5BQ9P2D3 2071 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 PABPN1LA6NDY0 278 aaKnown RBP12.03□□□□□ -0.48
SLIRP-209ENST00000557342 FAM159BA6NKW6 160 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 TARM1B6A8C7 271 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 PRICKLE3O43900 615 aaPredicted RBP12.03□□□□□ -0.48
SLIRP-209ENST00000557342 CPNE3O75131 537 aaKnown RBP12.03□□□□□ -0.48
SLIRP-209ENST00000557342 SCRG1O75711 98 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 HBQ1P09105 142 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 HIST1H2AGP0C0S8 130 aaPredicted RBP12.03□□□□□ -0.48
SLIRP-209ENST00000557342 HIST1H2ADP20671 130 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 CMPK1P30085 196 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 GP5P40197 560 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 PNLIPRP1P54315 467 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 SLC12A2P55011 1212 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 ITGA1P56199 1179 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 GPX6P59796 221 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 NAB1Q13506 487 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 ARHGAP40Q5TG30 622 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 FIGLAQ6QHK4 219 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 CDHR3Q6ZTQ4 885 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 TIPARPQ7Z3E1 657 aaKnown RBP12.03□□□□□ -0.48
SLIRP-209ENST00000557342 VASH2Q86V25 355 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 GPR135Q8IZ08 494 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 GALNT6Q8NCL4 622 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 ZUFSPQ96AP4 578 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 PDLIM5Q96HC4 596 aaKnown RBP12.03□□□□□ -0.48
SLIRP-209ENST00000557342 HIST1H2AHQ96KK5 128 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 CCDC138Q96M89 665 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 OLFM1Q99784 485 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 HIST1H2AJQ99878 128 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 H2AFJQ9BTM1 129 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 SLC12A9Q9BXP2 914 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 TRIM54Q9BYV2 358 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 SLC7A5P2Q9GIP4 190 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 GPN2Q9H9Y4 310 aaPredicted RBP12.03□□□□□ -0.48
SLIRP-209ENST00000557342 PARVBQ9HBI1 364 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 POPDC3Q9HBV1 291 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 LRRC4CQ9HCJ2 640 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 SMYD2Q9NRG4 433 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 DMGDHQ9UI17 866 aaKnown RBP12.03□□□□□ -0.48
SLIRP-209ENST00000557342 PADI1Q9ULC6 663 aa12.03□□□□□ -0.48
SLIRP-209ENST00000557342 ANKRD11Q6UB99 2663 aaPredicted RBP12.03□□□□□ -0.48
SLIRP-209ENST00000557342 TEX51A0A1B0GUA7 166 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 A0A1W2PPV9 198 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 E7EQ34 232 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 EFSO43281 561 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 CCNDBP1O95273 360 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 TIAF1O95411 115 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 SLC16A8O95907 504 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 NTRK1P04629 796 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 KLK3P07288 261 aaPredicted RBP12.02□□□□□ -0.49
SLIRP-209ENST00000557342 LIFP15018 202 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 MAGP20916 626 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 SAT1P21673 171 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 PHBP35232 272 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 RPA3P35244 121 aaPredicted RBP12.02□□□□□ -0.49
SLIRP-209ENST00000557342 STAT5AP42229 794 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 POU4F1Q01851 419 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 FASTKQ14296 549 aaKnown RBP12.02□□□□□ -0.49
SLIRP-209ENST00000557342 ZIC1Q15915 447 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 ZC3H12BQ5HYM0 836 aaKnown RBP12.02□□□□□ -0.49
SLIRP-209ENST00000557342 GRTP1Q5TC63 336 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 RELL1Q8IUW5 271 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 CTAGE3PQ8IX95 158 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 SYTL1Q8IYJ3 562 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 DNAJC22Q8N4W6 341 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 NKAPQ8N5F7 415 aaKnown RBP12.02□□□□□ -0.49
SLIRP-209ENST00000557342 OR2L3Q8NG85 312 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 OR2A1Q8NGT9 310 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 OR1L3Q8NH93 324 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 FBF1Q8TES7 1133 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 ZNF480Q8WV37 535 aa12.02□□□□□ -0.49
SLIRP-209ENST00000557342 IFT81Q8WYA0 676 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms