RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 UAP1Q16222 522 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-228ENST00000557302 TMEM207Q6UWW9 146 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 TRMT10CQ7L0Y3 403 aaKnown RBP13.12□□□□□ -0.31
SHMT2-228ENST00000557302 CEP97Q8IW35 865 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 C19orf47Q8N9M1 422 aaKnown RBP13.12□□□□□ -0.31
SHMT2-228ENST00000557302 ZNF248Q8NDW4 579 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 FLVCR1-AS1Q8TAF5 88 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 SMPDL3AQ92484 453 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 DLG3Q92796 817 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 MRRFQ96E11 262 aaKnown RBP13.12□□□□□ -0.31
SHMT2-228ENST00000557302 SLC12A9Q9BXP2 914 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 KLHL25Q9H0H3 589 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 CAB39LQ9H9S4 337 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 PARVBQ9HBI1 364 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 APMAPQ9HDC9 416 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 PDE7BQ9NP56 450 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 ADAMTS6Q9UKP5 1117 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 ACSL6Q9UKU0 697 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 URB1O60287 2271 aaKnown RBP13.11□□□□□ -0.31
SHMT2-228ENST00000557302 A0A087WUV0 522 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-228ENST00000557302 RRP8O43159 456 aaKnown RBP13.11□□□□□ -0.31
SHMT2-228ENST00000557302 FKBP9O95302 570 aa13.11□□□□□ -0.31
SHMT2-228ENST00000557302 SLC16A8O95907 504 aa13.11□□□□□ -0.31
SHMT2-228ENST00000557302 HIST1H2AGP0C0S8 130 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-228ENST00000557302 FOLR1P15328 257 aa13.11□□□□□ -0.31
SHMT2-228ENST00000557302 STMN1P16949 149 aa13.11□□□□□ -0.31
SHMT2-228ENST00000557302 HIST1H2ADP20671 130 aa13.11□□□□□ -0.31
SHMT2-228ENST00000557302 PMS2P54278 862 aa13.11□□□□□ -0.31
SHMT2-228ENST00000557302 PNLIPRP1P54315 467 aa13.11□□□□□ -0.31
SHMT2-228ENST00000557302 SF1Q15637 639 aaKnown RBP13.11□□□□□ -0.31
SHMT2-228ENST00000557302 GSPT2Q8IYD1 628 aaKnown RBP13.11□□□□□ -0.31
SHMT2-228ENST00000557302 SYTL1Q8IYJ3 562 aa13.11□□□□□ -0.31
SHMT2-228ENST00000557302 KCNE4Q8WWG9 221 aa13.11□□□□□ -0.31
SHMT2-228ENST00000557302 HIST1H2AHQ96KK5 128 aa13.11□□□□□ -0.31
SHMT2-228ENST00000557302 CCDC138Q96M89 665 aa13.11□□□□□ -0.31
SHMT2-228ENST00000557302 DCBLD2Q96PD2 775 aa13.11□□□□□ -0.31
SHMT2-228ENST00000557302 HIST1H2AJQ99878 128 aa13.11□□□□□ -0.31
SHMT2-228ENST00000557302 H2AFJQ9BTM1 129 aa13.11□□□□□ -0.31
SHMT2-228ENST00000557302 FANCEQ9HB96 536 aa13.11□□□□□ -0.31
SHMT2-228ENST00000557302 FGF21Q9NSA1 209 aa13.11□□□□□ -0.31
SHMT2-228ENST00000557302 INTS7Q9NVH2 962 aaKnown RBP13.11□□□□□ -0.31
SHMT2-228ENST00000557302 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-228ENST00000557302 RARRES3Q9UL19 164 aa13.11□□□□□ -0.31
SHMT2-228ENST00000557302 PDE10AQ9Y233 779 aa13.11□□□□□ -0.31
SHMT2-228ENST00000557302 ITPR1Q14643 2758 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 PHGDHO43175 533 aaKnown RBP13.1□□□□□ -0.31
SHMT2-228ENST00000557302 PRICKLE3O43900 615 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-228ENST00000557302 INHBAP08476 426 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 ABHD2P08910 425 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 ENO2P09104 434 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-228ENST00000557302 FAM153BP0C7A2 387 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 FGF5P12034 268 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 TNFRSF8P28908 595 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 RPA3P35244 121 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-228ENST00000557302 EIF2S3P41091 472 aaKnown RBP13.1□□□□□ -0.31
SHMT2-228ENST00000557302 RAB10P61026 200 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 TSTA3Q13630 321 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-228ENST00000557302 FASTKQ14296 549 aaKnown RBP13.1□□□□□ -0.31
SHMT2-228ENST00000557302 GPR19Q15760 415 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 ZKSCAN8Q15776 578 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-228ENST00000557302 PHKG1Q16816 387 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 FAM153CQ494X1 144 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.1□□□□□ -0.31
SHMT2-228ENST00000557302 BPHLQ86WA6 291 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-228ENST00000557302 ZFAND4Q86XD8 727 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 PPP1R3BQ86XI6 285 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 UHMK1Q8TAS1 419 aaKnown RBP13.1□□□□□ -0.31
SHMT2-228ENST00000557302 ZNF480Q8WV37 535 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 ANKRD49Q8WVL7 239 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.1□□□□□ -0.31
SHMT2-228ENST00000557302 ANKRD7Q92527 254 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 TCTN2Q96GX1 697 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 NAF1Q96HR8 494 aaKnown RBP13.1□□□□□ -0.31
SHMT2-228ENST00000557302 TRIM54Q9BYV2 358 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 CHRNA10Q9GZZ6 450 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 ANKZF1Q9H8Y5 726 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 IKBKGQ9Y6K9 419 aa13.1□□□□□ -0.31
SHMT2-228ENST00000557302 CELSR3Q9NYQ7 3312 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 A0A1W2PPV9 198 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 NPEPPSL1A6NEC2 478 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 SRRM3A6NNA2 597 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-228ENST00000557302 E7ENX8 843 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 STMND1H3BQB6 276 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 RIPK2O43353 540 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 WISP3O95389 354 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-228ENST00000557302 MYBL2P10244 700 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 LIPCP11150 499 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 MAGP20916 626 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 PSMB5P28074 263 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 IMPA1P29218 277 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 CRABP2P29373 138 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 AP1S2P56377 157 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 TAP2Q03519 686 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 BMPR2Q13873 1038 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 ZIC1Q15915 447 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 MROH9Q5TGP6 573 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 SUSD1Q6UWL2 747 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 LRRC69Q6ZNQ3 347 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 CDHR3Q6ZTQ4 885 aa13.09□□□□□ -0.31
SHMT2-228ENST00000557302 RAPH1Q70E73 1250 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms