RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 HSF1Q00613 529 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 CACNG1Q06432 222 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 MSLNQ13421 630 aaPredicted RBP12.31□□□□□ -0.44
VPS29-211ENST00000553128 GRM7Q14831 915 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 KIR2DS3Q14952 304 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 CNSTQ6PJW8 725 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 NEK10Q6ZWH5 1172 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 SNX20Q7Z614 316 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 CHERPQ8IWX8 916 aaKnown RBP12.31□□□□□ -0.44
VPS29-211ENST00000553128 TBC1D21Q8IYX1 336 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 OR5K2Q8NHB8 316 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 AGAP11Q8TF27 550 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 RNF25Q96BH1 459 aaPredicted RBP12.31□□□□□ -0.44
VPS29-211ENST00000553128 ULK4Q96C45 1275 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 GPR137Q96N19 417 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 MAK16Q9BXY0 300 aaKnown RBP12.31□□□□□ -0.44
VPS29-211ENST00000553128 PACSIN1Q9BY11 444 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 ZNF304Q9HCX3 659 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 ZDHHC3Q9NYG2 299 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 PRSS21Q9Y6M0 314 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 FITM1A5D6W6 292 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 ZNF487B1APH4 448 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 BHMG1C9JSJ3 638 aaPredicted RBP12.3□□□□□ -0.44
VPS29-211ENST00000553128 CTSVO60911 334 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 UQCRHP07919 91 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 KLK2P20151 261 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 ACRV1P26436 265 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 RAB28P51157 221 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 ZNF140P52738 457 aaPredicted RBP12.3□□□□□ -0.44
VPS29-211ENST00000553128 EFNA3P52797 238 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 VSX2P58304 361 aaPredicted RBP12.3□□□□□ -0.44
VPS29-211ENST00000553128 MPP3Q13368 585 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 NFKBIBQ15653 356 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 LONRF1Q17RB8 773 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 ZNF766Q5HY98 468 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 FRMPD2BQ6IN97 320 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 ALKBH5Q6P6C2 394 aaKnown RBP12.3□□□□□ -0.44
VPS29-211ENST00000553128 RBM43Q6ZSC3 357 aaKnown RBP12.3□□□□□ -0.44
VPS29-211ENST00000553128 PID1Q7Z2X4 250 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 SERPINA9Q86WD7 417 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 DOLPP1Q86YN1 238 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 TTC29Q8NA56 475 aaPredicted RBP12.3□□□□□ -0.44
VPS29-211ENST00000553128 SUN3Q8TAQ9 357 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 DENND1AQ8TEH3 1009 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 THAP3Q8WTV1 239 aaPredicted RBP12.3□□□□□ -0.44
VPS29-211ENST00000553128 TFB1MQ8WVM0 346 aaKnown RBP12.3□□□□□ -0.44
VPS29-211ENST00000553128 SDCCAG3Q96C92 435 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 NAP1L5Q96NT1 182 aaPredicted RBP12.3□□□□□ -0.44
VPS29-211ENST00000553128 IL17FQ96PD4 163 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 DMRTA2Q96SC8 542 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 SELENOSQ9BQE4 189 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 MENTQ9BUN1 341 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 FSD1LQ9BXM9 530 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 RNF32Q9H0A6 362 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 CXXC4Q9H2H0 198 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 NPDC1Q9NQX5 325 aaPredicted RBP12.3□□□□□ -0.44
VPS29-211ENST00000553128 ENAMQ9NRM1 1142 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 ZNF282Q9UDV7 671 aaPredicted RBP12.3□□□□□ -0.44
VPS29-211ENST00000553128 POLG2Q9UHN1 485 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 NENFQ9UMX5 172 aa12.3□□□□□ -0.44
VPS29-211ENST00000553128 TRBV5-4A0A0C4DH59 114 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 A0A1W2PQ72 361 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 FAM221AA4D161 298 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 IDSB3KWA1 339 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 NPIPA5E9PKD4 350 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 FAM155BO75949 473 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 SLCO2B1O94956 709 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 AP2A1O95782 977 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 KRT1P04264 644 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 ITGALP20701 1170 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 FDXRP22570 491 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 PKLRP30613 574 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 MC4RP32245 332 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 EMP2P54851 167 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 OCA2Q04671 838 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 ZNF33BQ06732 778 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 MESDQ14696 234 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 PCOLCEQ15113 449 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 WASHC2DQ5SRD0 308 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 YOD1Q5VVQ6 348 aaPredicted RBP12.29□□□□□ -0.44
VPS29-211ENST00000553128 ZNF449Q6P9G9 518 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 FIGLAQ6QHK4 219 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 MFSD7Q6UXD7 560 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 FGD2Q7Z6J4 655 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 PIANPQ8IYJ0 282 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 CA5BP1Q8WTZ4 195 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 SIGLEC12Q96PQ1 595 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 C10orf88Q9H8K7 445 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 VPS37BQ9H9H4 285 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 DLL4Q9NR61 685 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 STMN3Q9NZ72 180 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 NPIPA1Q9UND3 350 aa12.29□□□□□ -0.44
VPS29-211ENST00000553128 LUC7L2Q9Y383 392 aaKnown RBP12.29□□□□□ -0.44
VPS29-211ENST00000553128 IGLV3-12A0A075B6K2 115 aa12.28□□□□□ -0.44
VPS29-211ENST00000553128 LOC105369274A0A096LPK9 316 aa12.28□□□□□ -0.44
VPS29-211ENST00000553128 LOC102723532A0A0G2JNH3 316 aa12.28□□□□□ -0.44
VPS29-211ENST00000553128 HYKKA2RU49 373 aa12.28□□□□□ -0.44
VPS29-211ENST00000553128 C5orf60A6NFR6 353 aa12.28□□□□□ -0.44
VPS29-211ENST00000553128 TMEM200CA6NKL6 621 aa12.28□□□□□ -0.44
VPS29-211ENST00000553128 LIN7AO14910 233 aaPredicted RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms