RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 CHRNA10Q9GZZ6 450 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 FAM96AQ9H5X1 160 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 WDR54Q9H977 334 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 PLA2G3Q9NZ20 509 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 CRLS1Q9UJA2 301 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 PLCL2Q9UPR0 1127 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 POLEQ07864 2286 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 FER1L5A0AVI2 2057 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 HIVEP1P15822 2718 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 A0A1B0GX78 115 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 KCNN4O15554 427 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 CHRM5P08912 532 aaPredicted RBP10.05□□□□□ -0.8
VPS29-208ENST00000550267 TPBGLP0DKB5 382 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 RALBP11234 206 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 SPTBP11277 2137 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 ATP1B2P14415 290 aaPredicted RBP10.05□□□□□ -0.8
VPS29-208ENST00000550267 MST1P26927 711 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 SSTR2P30874 369 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 SHMT2P34897 504 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 PBX1P40424 430 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 CD151P48509 253 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 ARG2P78540 354 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 ADORA2A-AS1P86434 159 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 TYRO3Q06418 890 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 SLC5A12Q1EHB4 618 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 FILIP1LQ4L180 1135 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 MTFR2Q6P444 385 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 DEPDC4Q8N2C3 294 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 OR5AR1Q8NGP9 310 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 DLG3Q92796 817 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 NAP1L5Q96NT1 182 aaPredicted RBP10.05□□□□□ -0.8
VPS29-208ENST00000550267 FCRL5Q96RD9 977 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 COPS8Q99627 209 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 MRM3Q9HC36 420 aaKnown RBP10.05□□□□□ -0.8
VPS29-208ENST00000550267 ZNF160Q9HCG1 818 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 EURLQ9NYK6 297 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 KLHL8Q9P2G9 620 aaPredicted RBP10.05□□□□□ -0.8
VPS29-208ENST00000550267 SAE1Q9UBE0 346 aaPredicted RBP10.05□□□□□ -0.8
VPS29-208ENST00000550267 CTSFQ9UBX1 484 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 SEC14L3Q9UDX4 400 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 KLHL20Q9Y2M5 609 aa10.05□□□□□ -0.8
VPS29-208ENST00000550267 BZW2Q9Y6E2 419 aaKnown RBP10.05□□□□□ -0.8
VPS29-208ENST00000550267 TRAV17A0A0B4J275 112 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 C2orf81A6NN90 581 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 AGAP14A8MT82 685 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 ISM1B1AKI9 464 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 ONECUT2O95948 504 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 F10P00742 488 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 AGTP01019 485 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 KRT1P04264 644 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 SERPING1P05155 500 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 PIM1P11309 404 aaPredicted RBP10.04□□□□□ -0.8
VPS29-208ENST00000550267 ZFXP17010 805 aaPredicted RBP10.04□□□□□ -0.8
VPS29-208ENST00000550267 MCM3P25205 808 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 PEBP1P30086 187 aaKnown RBP10.04□□□□□ -0.8
VPS29-208ENST00000550267 KIR3DL1P43629 444 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 TNFSF10P50591 281 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 ARSFP54793 590 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 MESDQ14696 234 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 CDSNQ15517 529 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 INAQ16352 499 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 ZNF449Q6P9G9 518 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 XKRXQ6PP77 449 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 PID1Q7Z2X4 250 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 ZNF567Q8N184 647 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 METTL27Q8N6F8 245 aaPredicted RBP10.04□□□□□ -0.8
VPS29-208ENST00000550267 OR13C4Q8NGS5 318 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 TFB1MQ8WVM0 346 aaKnown RBP10.04□□□□□ -0.8
VPS29-208ENST00000550267 ULK4Q96C45 1275 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 HSH2DQ96JZ2 352 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 FICDQ9BVA6 458 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 PHACTR1Q9C0D0 580 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 TSPAN10Q9H1Z9 355 aaPredicted RBP10.04□□□□□ -0.8
VPS29-208ENST00000550267 SLC26A1Q9H2B4 701 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 SEMA3GQ9NS98 782 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 LMBRD1Q9NUN5 540 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 CHMP5Q9NZZ3 219 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 PTGFRNQ9P2B2 879 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 UVRAGQ9P2Y5 699 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 PLAGL1Q9UM63 463 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 NENFQ9UMX5 172 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 TDRKHQ9Y2W6 561 aaKnown RBP10.04□□□□□ -0.8
VPS29-208ENST00000550267 CCDC88CQ9P219 2028 aa10.04□□□□□ -0.8
VPS29-208ENST00000550267 DIDO1Q9BTC0 2240 aaKnown RBP10.03□□□□□ -0.8
VPS29-208ENST00000550267 DYTNA2CJ06 578 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 CCL22O00626 93 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 DSCR3O14972 297 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 WISP2O76076 250 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 HPP00738 406 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 PECAM1P16284 738 aaPredicted RBP10.03□□□□□ -0.8
VPS29-208ENST00000550267 CAPN3P20807 821 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 MAGP20916 626 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 OR1D4P47884 311 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 CDKN1CP49918 316 aaPredicted RBP10.03□□□□□ -0.8
VPS29-208ENST00000550267 FANCCQ00597 558 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 RPA4Q13156 261 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 MPP3Q13368 585 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 TAF1AQ15573 450 aaPredicted RBP10.03□□□□□ -0.8
VPS29-208ENST00000550267 FIGNQ5HY92 759 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 VSIG1Q86XK7 387 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms