RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 EFHD2Q96C19 240 aaPredicted RBP13.39□□□□□ -0.27
VPS33A-208ENST00000543633 FAM193BQ96PV7 902 aaPredicted RBP13.39□□□□□ -0.27
VPS33A-208ENST00000543633 SIGLEC11Q96RL6 698 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 GPR63Q9BZJ6 419 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 CIPCQ9C0C6 399 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 SP140LQ9H930 580 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 ERVK-18Q9QC07 812 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 LHX3Q9UBR4 397 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 FAM32AQ9Y421 112 aaKnown RBP13.39□□□□□ -0.27
VPS33A-208ENST00000543633 TRIM43BA6NCK2 446 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 TMEM247A6NEH6 219 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 TTC36A6NLP5 189 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 SLC38A8A6NNN8 435 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 AREL1O15033 823 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 XPNPEP2O43895 674 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 FTH1P02794 183 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 COL6A1P12109 1028 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 BMP4P12644 408 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 BMP1P13497 986 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 PRKACGP22612 351 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 CD6P30203 668 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 TRPC1P48995 793 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 AP1S1P61966 158 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 RPS24P62847 133 aaKnown RBP13.39□□□□□ -0.27
VPS33A-208ENST00000543633 TUBA1BP68363 451 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 HMGCS1Q01581 520 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 PLEKHG6Q3KR16 790 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 GTDC1Q4AE62 458 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 ANKRD34AQ69YU3 496 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 TUBA1AQ71U36 451 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 BTLAQ7Z6A9 289 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 CYP4Z1Q86W10 505 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 SERPINA9Q86WD7 417 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 ABI1Q8IZP0 508 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 CPA6Q8N4T0 437 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 KRTCAP2Q8N6L1 136 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 NDNFQ8TB73 568 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 MAGEB10Q96LZ2 347 aaPredicted RBP13.39□□□□□ -0.27
VPS33A-208ENST00000543633 DACH2Q96NX9 599 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 SMIM14Q96QK8 99 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 SEPT5Q99719 369 aaPredicted RBP13.39□□□□□ -0.27
VPS33A-208ENST00000543633 SPATA9Q9BWV2 254 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 BTBD2Q9BX70 525 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 PARVBQ9HBI1 364 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 CPNE5Q9HCH3 593 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 ZFP14Q9HCL3 533 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 ACOT13Q9NPJ3 140 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 VNN3Q9NY84 501 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 PRG3Q9Y2Y8 225 aaPredicted RBP13.39□□□□□ -0.27
VPS33A-208ENST00000543633 SH3BP1Q9Y3L3 701 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 GMPPBQ9Y5P6 360 aa13.39□□□□□ -0.27
VPS33A-208ENST00000543633 GPC6Q9Y625 555 aaPredicted RBP13.39□□□□□ -0.27
VPS33A-208ENST00000543633 CEP350Q5VT06 3117 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 CBX4O00257 560 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 FFAR3O14843 346 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 GPR42O15529 346 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 PRMT3O60678 531 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 CLDN9O95484 217 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 UGT2B10P36537 528 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 MASP1P48740 699 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 CLK3P49761 638 aaKnown RBP13.38□□□□□ -0.27
VPS33A-208ENST00000543633 PPP5CP53041 499 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 ARF5P84085 180 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 MAD2L1BPQ15013 274 aaPredicted RBP13.38□□□□□ -0.27
VPS33A-208ENST00000543633 PROX2Q3B8N5 592 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 GPRC6AQ5T6X5 926 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 UBE2UQ5VVX9 321 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 LRRC70Q7Z2Q7 622 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 PHACTR4Q8IZ21 702 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 TCAIMQ8N3R3 496 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 BEND7Q8N7W2 519 aaPredicted RBP13.38□□□□□ -0.27
VPS33A-208ENST00000543633 NUDT8Q8WV74 236 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 NELL1Q92832 810 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 SLC35B4Q969S0 331 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 CMTM7Q96FZ5 175 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 MYO19Q96H55 970 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 HTATIP2Q9BUP3 242 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 RIBC2Q9H4K1 309 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 SCHIP1Q9P0W5 487 aaPredicted RBP13.38□□□□□ -0.27
VPS33A-208ENST00000543633 DNMT3BQ9UBC3 853 aaKnown RBP13.38□□□□□ -0.27
VPS33A-208ENST00000543633 OSGIN1Q9UJX0 560 aa13.38□□□□□ -0.27
VPS33A-208ENST00000543633 SAGE2PA6NJ88 616 aa13.37□□□□□ -0.27
VPS33A-208ENST00000543633 TTC34A8MYJ7 566 aa13.37□□□□□ -0.27
VPS33A-208ENST00000543633 EVPLLA8MZ36 301 aa13.37□□□□□ -0.27
VPS33A-208ENST00000543633 LOC730098B7Z3J9 87 aa13.37□□□□□ -0.27
VPS33A-208ENST00000543633 H7C4K7 107 aa13.37□□□□□ -0.27
VPS33A-208ENST00000543633 TAF4O00268 1085 aa13.37□□□□□ -0.27
VPS33A-208ENST00000543633 GAPDHSO14556 408 aaPredicted RBP13.37□□□□□ -0.27
VPS33A-208ENST00000543633 KDM1AO60341 852 aa13.37□□□□□ -0.27
VPS33A-208ENST00000543633 ADAMTS4O75173 837 aa13.37□□□□□ -0.27
VPS33A-208ENST00000543633 STK16O75716 305 aa13.37□□□□□ -0.27
VPS33A-208ENST00000543633 VNN2O95498 520 aa13.37□□□□□ -0.27
VPS33A-208ENST00000543633 PRAMEF1O95521 474 aa13.37□□□□□ -0.27
VPS33A-208ENST00000543633 CD160O95971 181 aa13.37□□□□□ -0.27
VPS33A-208ENST00000543633 MT-ND2P03891 347 aa13.37□□□□□ -0.27
VPS33A-208ENST00000543633 PRKAR2AP13861 404 aaKnown RBP13.37□□□□□ -0.27
VPS33A-208ENST00000543633 CCND3P30281 292 aaPredicted RBP13.37□□□□□ -0.27
VPS33A-208ENST00000543633 GGT5P36269 586 aa13.37□□□□□ -0.27
VPS33A-208ENST00000543633 RXRGP48443 463 aa13.37□□□□□ -0.27
VPS33A-208ENST00000543633 DAPP51397 102 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms