RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 CAPN13Q6MZZ7 669 aaPredicted RBP11.78□□□□□ -0.52
DDX55-210ENST00000543016 CYB5D1Q6P9G0 228 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 AGTRAPQ6RW13 159 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 DHRS13Q6UX07 377 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 TMPRSS7Q7RTY8 843 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 PRSS42Q7Z5A4 293 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 RAB44Q7Z6P3 723 aaPredicted RBP11.78□□□□□ -0.52
DDX55-210ENST00000543016 SPATA6LQ8N4H0 392 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 DCBLD1Q8N8Z6 715 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 PDPRQ8NCN5 879 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 OR56A3Q8NH54 315 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 PTERQ96BW5 349 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 SMC6Q96SB8 1091 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 ATOH8Q96SQ7 321 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 MIPEPQ99797 713 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 EGFL8Q99944 293 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 NUDT22Q9BRQ3 303 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 HAUS8Q9BT25 410 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 PITPNM3Q9BZ71 974 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 CHRNA10Q9GZZ6 450 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 MRPL46Q9H2W6 279 aaKnown RBP11.78□□□□□ -0.52
DDX55-210ENST00000543016 ACBD3Q9H3P7 528 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 XKR8Q9H6D3 395 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 ALG9Q9H6U8 611 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 SYNDIG1Q9H7V2 258 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 SSU72Q9NP77 194 aaKnown RBP11.78□□□□□ -0.52
DDX55-210ENST00000543016 CCDC177Q9NQR7 707 aaPredicted RBP11.78□□□□□ -0.52
DDX55-210ENST00000543016 INTS7Q9NVH2 962 aaKnown RBP11.78□□□□□ -0.52
DDX55-210ENST00000543016 UTP6Q9NYH9 597 aaKnown RBP11.78□□□□□ -0.52
DDX55-210ENST00000543016 ACTR10Q9NZ32 417 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 STOX2Q9P2F5 926 aaPredicted RBP11.78□□□□□ -0.52
DDX55-210ENST00000543016 PLAGL1Q9UM63 463 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 FRYLO94915 3013 aa11.77□□□□□ -0.52
DDX55-210ENST00000543016 A0A1W2PPM1 405 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 GSAPA4D1B5 854 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 ISM1B1AKI9 464 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 COPEO14579 308 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 PRICKLE3O43900 615 aaPredicted RBP11.77□□□□□ -0.53
DDX55-210ENST00000543016 KLK8O60259 260 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 THRAP10827 490 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 JUPP14923 745 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 TAC1P20366 129 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 CSF2RBP32927 897 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 RPA3P35244 121 aaPredicted RBP11.77□□□□□ -0.53
DDX55-210ENST00000543016 CFHR1Q03591 330 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 OR4D1Q15615 310 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 ISXQ2M1V0 245 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 CCDC153Q494R4 210 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 TNFAIP8L3Q5GJ75 292 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 TECRLQ5HYJ1 363 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 HES3Q5TGS1 186 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 IRGCQ6NXR0 463 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 SPESP1Q6UW49 350 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 DGLUCYQ7Z3D6 616 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 ARHGAP22Q7Z5H3 698 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 SLITRK4Q8IW52 837 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 KLHDC8AQ8IYD2 350 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 LRRC56Q8IYG6 542 aaPredicted RBP11.77□□□□□ -0.53
DDX55-210ENST00000543016 PLD6Q8N2A8 252 aaKnown RBP11.77□□□□□ -0.53
DDX55-210ENST00000543016 LMNTD1Q8N9Z9 388 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 LINC01555Q8NAE3 123 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 ZUFSPQ96AP4 578 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 RHBDF1Q96CC6 855 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 LIN37Q96GY3 246 aaPredicted RBP11.77□□□□□ -0.53
DDX55-210ENST00000543016 SCYL1Q96KG9 808 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 IL17FQ96PD4 163 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 SGPP1Q9BX95 441 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 CAPS2Q9BXY5 557 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 IQCGQ9H095 443 aaKnown RBP11.77□□□□□ -0.53
DDX55-210ENST00000543016 CD274Q9NZQ7 290 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 ANKMY1Q9P2S6 941 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 MID2Q9UJV3 735 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 IKZF3Q9UKT9 509 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 ATXN7L1Q9ULK2 861 aaPredicted RBP11.77□□□□□ -0.53
DDX55-210ENST00000543016 KLK4Q9Y5K2 254 aa11.77□□□□□ -0.53
DDX55-210ENST00000543016 TNPO3Q9Y5L0 923 aaKnown RBP11.77□□□□□ -0.53
DDX55-210ENST00000543016 LAMA1P25391 3075 aa11.76□□□□□ -0.53
DDX55-210ENST00000543016 IGHV5-10-1A0A0J9YXX1 117 aa11.76□□□□□ -0.53
DDX55-210ENST00000543016 A0A0J9YY10 115 aa11.76□□□□□ -0.53
DDX55-210ENST00000543016 TARM1B6A8C7 271 aa11.76□□□□□ -0.53
DDX55-210ENST00000543016 GOLGA8RI6L899 631 aa11.76□□□□□ -0.53
DDX55-210ENST00000543016 MAP2K7O14733 419 aa11.76□□□□□ -0.53
DDX55-210ENST00000543016 SMIM24O75264 130 aa11.76□□□□□ -0.53
DDX55-210ENST00000543016 ZBTB11O95625 1053 aaPredicted RBP11.76□□□□□ -0.53
DDX55-210ENST00000543016 GUCA1CO95843 209 aa11.76□□□□□ -0.53
DDX55-210ENST00000543016 HOXB3P14651 431 aaPredicted RBP11.76□□□□□ -0.53
DDX55-210ENST00000543016 UGT2B7P16662 529 aa11.76□□□□□ -0.53
DDX55-210ENST00000543016 CDH3P22223 829 aa11.76□□□□□ -0.53
DDX55-210ENST00000543016 CMPK1P30085 196 aa11.76□□□□□ -0.53
DDX55-210ENST00000543016 GLRBP48167 497 aa11.76□□□□□ -0.53
DDX55-210ENST00000543016 ALDH18A1P54886 795 aaKnown RBP11.76□□□□□ -0.53
DDX55-210ENST00000543016 NAA20P61599 178 aa11.76□□□□□ -0.53
DDX55-210ENST00000543016 RELAQ04206 551 aa11.76□□□□□ -0.53
DDX55-210ENST00000543016 PRDX1Q06830 199 aaKnown RBP11.76□□□□□ -0.53
DDX55-210ENST00000543016 NAE1Q13564 534 aa11.76□□□□□ -0.53
DDX55-210ENST00000543016 SF1Q15637 639 aaKnown RBP11.76□□□□□ -0.53
DDX55-210ENST00000543016 CACHD1Q5VU97 1274 aa11.76□□□□□ -0.53
DDX55-210ENST00000543016 LCTLQ6UWM7 567 aa11.76□□□□□ -0.53
DDX55-210ENST00000543016 ZNF574Q6ZN55 896 aaPredicted RBP11.76□□□□□ -0.53
DDX55-210ENST00000543016 SRRM1Q8IYB3 904 aaKnown RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms