RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 A0A087WXM4 84 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 H0YIV9 168 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 SCAMP3O14828 347 aaKnown RBP9.61□□□□□ -0.87
SS18-205ENST00000542420 SGTAO43765 313 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 ATG13O75143 517 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 CATP04040 527 aaKnown RBP9.61□□□□□ -0.87
SS18-205ENST00000542420 PRPS1L1P21108 318 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 CA8P35219 290 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 MMP12P39900 470 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 CAPGP40121 348 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 ERVFC1P60507 584 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 CHRNB3Q05901 458 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 ABHD18Q0P651 414 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 EIF4HQ15056 248 aaKnown RBP9.61□□□□□ -0.87
SS18-205ENST00000542420 LY6G5CQ5SRR4 150 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 FRG2Q64ET8 278 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 GRHL2Q6ISB3 625 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 USP51Q70EK9 711 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 TMCO2Q7Z6W1 182 aaPredicted RBP9.61□□□□□ -0.87
SS18-205ENST00000542420 CBR4Q8N4T8 237 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 CHST14Q8NCH0 376 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 TMIEQ8NEW7 156 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 TSPAN14Q8NG11 270 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 OR2T12Q8NG77 320 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 SPPL3Q8TCT6 385 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 C17orf50Q8WW18 174 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 BHMTQ93088 406 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 SAMD11Q96NU1 681 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 FRG2BQ96QU4 278 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 CCL26Q9Y258 94 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 SLC5A10A0PJK1 596 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 ELOVL7A1L3X0 281 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 DLGAP1O14490 977 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 CLOCKO15516 846 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 TPD52L2O43399 206 aaKnown RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 PFDN1O60925 122 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 E2F6O75461 281 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 RECQL5O94762 991 aaPredicted RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 ADH1CP00326 375 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 PDYNP01213 254 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 PRNPP04156 253 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 CISD3P0C7P0 127 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 OXTRP30559 389 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 OR4D2P58180 307 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 ELP6Q0PNE2 266 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 NRF1Q16656 503 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 FAM174BQ3ZCQ3 159 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 ERICH5Q6P6B1 374 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 NCCRP1Q6ZVX7 275 aaPredicted RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 CAMKMTQ7Z624 323 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 GPR149Q86SP6 731 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 PATL1Q86TB9 770 aaKnown RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 MICU2Q8IYU8 434 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 DTWD1Q8N5C7 304 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 DHRSXQ8N5I4 330 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 TERB1Q8NA31 727 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 ITFG1Q8TB96 612 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 GLYATL1Q969I3 302 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 CXorf40BQ96DE9 158 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 DOCK6Q96HP0 2047 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 PAWRQ96IZ0 340 aaKnown RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 ZNF514Q96K75 400 aaPredicted RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 PRPF18Q99633 342 aaKnown RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 CPPED1Q9BRF8 314 aaPredicted RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 PAIP1Q9H074 479 aaKnown RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 PCDH12Q9NPG4 1184 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 FAM120CQ9NX05 1096 aaKnown RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 OBP2AQ9NY56 170 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 DNAJB9Q9UBS3 223 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 SLCO3A1Q9UIG8 710 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 TSC22D4Q9Y3Q8 395 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 RNF103-CHMP3A0A140T963 221 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 NRG2O14511 850 aaPredicted RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 GJA1P17302 382 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 AMD1P17707 334 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 XPAP23025 273 aaPredicted RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 PPIBP23284 216 aaKnown RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 MAP4P27816 1152 aaKnown RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 S100A3P33764 101 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 ASMTP46597 345 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 RPS9P46781 194 aaKnown RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 EMP3P54852 163 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 ST8SIA6P61647 398 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 PTCHD3Q3KNS1 767 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 HSD11B1LQ7Z5J1 315 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 SERPINA11Q86U17 422 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 SLC22A15Q8IZD6 547 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 CPA6Q8N4T0 437 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 OR56A3Q8NH54 315 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 HERVK_113Q902F9 699 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 ELMO1Q92556 727 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 REPS1Q96D71 796 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 WDR34Q96EX3 536 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 REXO5Q96IC2 774 aaKnown RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 CNDP2Q96KP4 475 aaKnown RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 LINC00615Q96LM1 132 aaPredicted RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 FOPNLQ96NB1 174 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 TMEM74Q96NL1 305 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 OR52E6Q96RD3 313 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 CCM2Q9BSQ5 444 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms