RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 IRF8Q02556 426 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 ACBD5Q5T8D3 534 aaPredicted RBP16.45■□□□□ 0.22
USP28-208ENST00000540438 ABTB1Q969K4 478 aaPredicted RBP16.45■□□□□ 0.22
USP28-208ENST00000540438 STOML2Q9UJZ1 356 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 DMTF1Q9Y222 760 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 PCDHGA11Q9Y5H2 935 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 DOCK9Q9BZ29 2069 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.45■□□□□ 0.22
USP28-208ENST00000540438 XPNPEP2O43895 674 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 PRSS23O95084 383 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 ATE1O95260 518 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 OPN1SWP03999 348 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 GPIP06744 558 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 ATP1B2P14415 290 aaPredicted RBP16.45■□□□□ 0.22
USP28-208ENST00000540438 EEFSECP57772 596 aaKnown RBP16.45■□□□□ 0.22
USP28-208ENST00000540438 STARD3Q14849 445 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 ACOX1Q15067 660 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 TTLL9Q3SXZ7 439 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 FGD3Q5JSP0 725 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 HTR3DQ70Z44 454 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 EFL1Q7Z2Z2 1120 aaKnown RBP16.45■□□□□ 0.22
USP28-208ENST00000540438 GPR141Q7Z602 305 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 TMEM126BQ8IUX1 230 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 STON2Q8WXE9 905 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 ZNF689Q96CS4 500 aaPredicted RBP16.45■□□□□ 0.22
USP28-208ENST00000540438 TPD52L3Q96J77 140 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 KCTD5Q9NXV2 234 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 FBXO10Q9UK96 956 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 TBX21Q9UL17 535 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 ELOVL7A1L3X0 281 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 G3V2T6 193 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 ASLP04424 464 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 OR56A5P0C7T3 313 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 EPHA2P29317 976 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 ALDH4A1P30038 563 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 PON2Q15165 354 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 ANKDD1AQ495B1 522 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 FAM98BQ52LJ0 330 aaKnown RBP16.45■□□□□ 0.22
USP28-208ENST00000540438 USP39Q53GS9 565 aaKnown RBP16.45■□□□□ 0.22
USP28-208ENST00000540438 CRTC3Q6UUV7 619 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 TBC1D21Q8IYX1 336 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 C12orf43Q96C57 262 aaKnown RBP16.45■□□□□ 0.22
USP28-208ENST00000540438 FAM83DQ9H4H8 585 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 SLC32A1Q9H598 525 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 IFT80Q9P2H3 777 aaPredicted RBP16.45■□□□□ 0.22
USP28-208ENST00000540438 SLC25A13Q9UJS0 675 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 GFRA2O00451 464 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 GGT1P19440 569 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 AOAHP28039 575 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 HTR1EP28566 365 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 CAPGP40121 348 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 HKDC1Q2TB90 917 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 UAP1L1Q3KQV9 507 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.44■□□□□ 0.22
USP28-208ENST00000540438 GDPD4Q6W3E5 623 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 MACC1Q6ZN28 852 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 C12orf40Q86WS4 652 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 ZNF548Q8NEK5 533 aaPredicted RBP16.44■□□□□ 0.22
USP28-208ENST00000540438 CNIH3Q8TBE1 160 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 HSPBAP1Q96EW2 488 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 BDH2Q9BUT1 245 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 SEZ6LQ9BYH1 1024 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 REXO4Q9GZR2 422 aaKnown RBP16.44■□□□□ 0.22
USP28-208ENST00000540438 CXorf21Q9HAI6 301 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 FANCEQ9HB96 536 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 HSFX1Q9UBD0 423 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 SH2B3Q9UQQ2 575 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 ST14Q9Y5Y6 855 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 PRR23AA6NEV1 266 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 RFXANKO14593 260 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 XYLBO75191 536 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 ACPPP15309 386 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 WASP42768 502 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 PPP3CCP48454 512 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 AASDHQ4L235 1098 aaPredicted RBP16.44■□□□□ 0.22
USP28-208ENST00000540438 ADIPOR2Q86V24 386 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 ZDHHC13Q8IUH4 622 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 APLFQ8IW19 511 aaPredicted RBP16.44■□□□□ 0.22
USP28-208ENST00000540438 OR4K1Q8NGD4 311 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 SNRNP27Q8WVK2 155 aaKnown RBP16.44■□□□□ 0.22
USP28-208ENST00000540438 SH3KBP1Q96B97 665 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 PANX1Q96RD7 426 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 RHBDL2Q9NX52 303 aa16.44■□□□□ 0.22
USP28-208ENST00000540438 CNOT11Q9UKZ1 510 aaKnown RBP16.44■□□□□ 0.22
USP28-208ENST00000540438 TRBV5-4A0A0C4DH59 114 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 FKBP9O95302 570 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 OLFM2O95897 454 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 SLC16A8O95907 504 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 KRT6AP02538 564 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 KRT6BP04259 564 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 RHOP08100 348 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 CLTBP09497 229 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 KRT6CP48668 564 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 FKBP9P1Q75LS8 142 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 PTRH1Q86Y79 214 aaKnown RBP16.43■□□□□ 0.22
USP28-208ENST00000540438 SYT12Q8IV01 421 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 NCSTNQ92542 709 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 PDLIM5Q96HC4 596 aaKnown RBP16.43■□□□□ 0.22
USP28-208ENST00000540438 IL17FQ96PD4 163 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 MRGBPQ9NV56 204 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms