RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 VNN3Q9NY84 501 aa12.27□□□□□ -0.45
SFSWAP-208ENST00000539506 NUDT4Q9NZJ9 180 aa12.27□□□□□ -0.45
SFSWAP-208ENST00000539506 TRPM5Q9NZQ8 1165 aa12.27□□□□□ -0.45
SFSWAP-208ENST00000539506 hCG_2039718K7EN88 272 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 CLDN7O95471 211 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 PRAMEF1O95521 474 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 DBTP11182 482 aaKnown RBP12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 HTR1EP28566 365 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 CYP4F2P78329 520 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 CYP4F3Q08477 520 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 OVCA2Q8WZ82 227 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 RORBQ92753 470 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 TMEM175Q9BSA9 504 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 MROQ9BYG7 248 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 NDEL1Q9GZM8 345 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 GPN2Q9H9Y4 310 aaPredicted RBP12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 ZNF639Q9UID6 485 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 STOML2Q9UJZ1 356 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 PKP3Q9Y446 797 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 ANAPC1Q9H1A4 1944 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 ZNF99A8MXY4 864 aaPredicted RBP12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 NRG2O14511 850 aaPredicted RBP12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 ABLIM3O94929 683 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 LRATO95237 230 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 PGLSO95336 258 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 ANGPTL1O95841 491 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 ABCB1P08183 1280 aaPredicted RBP12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 RAP2AP10114 183 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 SMAD3P84022 425 aaKnown RBP12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 FRA10AC1Q70Z53 315 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 ANKRD13BQ86YJ7 626 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 POC5Q8NA72 575 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 FAR1Q8WVX9 515 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 TSEN34Q9BSV6 310 aaKnown RBP12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 MAGEE1Q9HCI5 957 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 TMEM9Q9P0T7 183 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 PCDH10Q9P2E7 1040 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 ENPP5Q9UJA9 477 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 C16orf96A6NNT2 1141 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 GFRA2O00451 464 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 UGT2B11O75310 529 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 SH3BGRLO75368 114 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 ZNF821O75541 412 aaPredicted RBP12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 DGKEP52429 567 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 TP53BP2Q13625 1128 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 SPATS1Q496A3 300 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 INO80DQ53TQ3 878 aaPredicted RBP12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 EFL1Q7Z2Z2 1120 aaKnown RBP12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 TMCO2Q7Z6W1 182 aaPredicted RBP12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 ZNF540Q8NDQ6 660 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 ZNF461Q8TAF7 563 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 NETO1Q8TDF5 533 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 STARD8Q92502 1023 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 ZBTB20Q9HC78 741 aaPredicted RBP12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 SCHIP1Q9P0W5 487 aaPredicted RBP12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 SPATA7Q9P0W8 599 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 YIPF1Q9Y548 306 aa12.26□□□□□ -0.45
SFSWAP-208ENST00000539506 LOC100506127A0A0U1RQW1 187 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 SSX4O60224 188 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 SLC25A14O95258 325 aaPredicted RBP12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 TRIM16O95361 564 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 SERPINA1P01009 418 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 MT-ND2P03891 347 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 INHAP05111 366 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 CASP9P55211 416 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 NFATC2Q13469 925 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 CRY1Q16526 586 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 ZXDCQ2QGD7 858 aaPredicted RBP12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 FAM214AQ32MH5 1076 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 SPANXN4Q5MJ08 99 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 MSRB3Q8IXL7 192 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 ADGRG2Q8IZP9 1017 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 PYCR2Q96C36 320 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 APOL5Q9BWW9 433 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 ZNF334Q9HCZ1 680 aaPredicted RBP12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 KIAA1522Q9P206 1035 aaPredicted RBP12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 AFF4Q9UHB7 1163 aaKnown RBP12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 MBD1Q9UIS9 605 aaPredicted RBP12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 BOLA1Q9Y3E2 137 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 ZNF451Q9Y4E5 1061 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 PRRC2BQ5JSZ5 2229 aaKnown RBP12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 KRT87PA6NCN2 255 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 H0YAE9 185 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 UGT2B4P06133 528 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 BPIP17213 487 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 HNF1BP35680 557 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 ALDH7A1P49419 539 aaKnown RBP12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 CCL23P55773 120 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 RPS3AP61247 264 aaKnown RBP12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 ISL1P61371 349 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 MVKQ03426 396 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 CDK5R2Q13319 367 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 TXNDC8Q6A555 127 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 PTRHD1Q6GMV3 140 aaKnown RBP12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 AHSA2Q719I0 299 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 TSPAN33Q86UF1 283 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 TERB1Q8NA31 727 aa12.25□□□□□ -0.45
SFSWAP-208ENST00000539506 PNPT1Q8TCS8 783 aaKnown RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms