RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 SP1P08047 785 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 SHMT2P34897 504 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 PTGER1P34995 402 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 CD86P42081 329 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 OR1D4P47884 311 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 DMTNQ08495 405 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 DPYSQ14117 519 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 PPP2R5EQ16537 467 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 ATP13A5Q4VNC0 1218 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 ZC3H12BQ5HYM0 836 aaKnown RBP8.72□□□□□ -1.01
USP28-205ENST00000537706 FNBP1LQ5T0N5 605 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 ACAD10Q6JQN1 1059 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 PRMT9Q6P2P2 845 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 UNC5DQ6UXZ4 953 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 CHERPQ8IWX8 916 aaKnown RBP8.72□□□□□ -1.01
USP28-205ENST00000537706 ADGRF3Q8IZF5 1079 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 SPDYE1Q8NFV5 336 aaPredicted RBP8.72□□□□□ -1.01
USP28-205ENST00000537706 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.72□□□□□ -1.01
USP28-205ENST00000537706 ZNF592Q92610 1267 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 PIGTQ969N2 578 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 PIP5K1AQ99755 562 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 KCNF1Q9H3M0 494 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 C14orf105Q9NVL8 296 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 RBM22Q9NW64 420 aaKnown RBP eCLIP8.72□□□□□ -1.01
USP28-205ENST00000537706 PCSK1NQ9UHG2 260 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 CBLCQ9ULV8 474 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 CNTRLQ7Z7A1 2325 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 DOCK10Q96BY6 2186 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 CDK2AP1O14519 115 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 SPRY1O43609 319 aaPredicted RBP8.72□□□□□ -1.01
USP28-205ENST00000537706 MX2P20592 715 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 PSMA2P25787 234 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 CDR2Q01850 454 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 MYL5Q02045 173 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 ITGA9Q13797 1035 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 ZIC1Q15915 447 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 MAPKAPK3Q16644 382 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 ACER2Q5QJU3 275 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 KIAA0930Q6ICG6 404 aaPredicted RBP8.72□□□□□ -1.01
USP28-205ENST00000537706 ARHGAP11AQ6P4F7 1023 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 WDR53Q7Z5U6 358 aaPredicted RBP8.72□□□□□ -1.01
USP28-205ENST00000537706 FGD2Q7Z6J4 655 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 YIPF4Q9BSR8 244 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 YIPF2Q9BWQ6 316 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 ZNF700Q9H0M5 742 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 SIX2Q9NPC8 291 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 SPTLC3Q9NUV7 552 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 INTS7Q9NVH2 962 aaKnown RBP8.72□□□□□ -1.01
USP28-205ENST00000537706 CWC15Q9P013 229 aaKnown RBP8.72□□□□□ -1.01
USP28-205ENST00000537706 B4GALT7Q9UBV7 327 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 MAU2Q9Y6X3 613 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 ZNF469Q96JG9 3925 aaPredicted RBP8.72□□□□□ -1.01
USP28-205ENST00000537706 HCFC1P51610 2035 aa8.71□□□□□ -1.01
USP28-205ENST00000537706 FIGNL2A6NMB9 653 aa8.71□□□□□ -1.02
USP28-205ENST00000537706 DNAJB6O75190 326 aa8.71□□□□□ -1.02
USP28-205ENST00000537706 CELA2AP08217 269 aa8.71□□□□□ -1.02
USP28-205ENST00000537706 PRKCSHP14314 528 aaPredicted RBP8.71□□□□□ -1.02
USP28-205ENST00000537706 FBLP22087 321 aaKnown RBP8.71□□□□□ -1.02
USP28-205ENST00000537706 CD96P40200 585 aa8.71□□□□□ -1.02
USP28-205ENST00000537706 CFAP206Q8IYR0 622 aa8.71□□□□□ -1.02
USP28-205ENST00000537706 METTL27Q8N6F8 245 aaPredicted RBP8.71□□□□□ -1.02
USP28-205ENST00000537706 DDHD1Q8NEL9 900 aa8.71□□□□□ -1.02
USP28-205ENST00000537706 HM13Q8TCT9 377 aa8.71□□□□□ -1.02
USP28-205ENST00000537706 TMEM125Q96AQ2 219 aa8.71□□□□□ -1.02
USP28-205ENST00000537706 SIGLEC12Q96PQ1 595 aa8.71□□□□□ -1.02
USP28-205ENST00000537706 HES7Q9BYE0 225 aa8.71□□□□□ -1.02
USP28-205ENST00000537706 XKR8Q9H6D3 395 aa8.71□□□□□ -1.02
USP28-205ENST00000537706 KCNK13Q9HB14 408 aa8.71□□□□□ -1.02
USP28-205ENST00000537706 FOXD3Q9UJU5 478 aaPredicted RBP8.71□□□□□ -1.02
USP28-205ENST00000537706 MAN1B1Q9UKM7 699 aa8.71□□□□□ -1.02
USP28-205ENST00000537706 ISM1B1AKI9 464 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 HCRTR1O43613 425 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 TP53P04637 393 aaPredicted RBP8.7□□□□□ -1.02
USP28-205ENST00000537706 MTIF2P46199 727 aaKnown RBP8.7□□□□□ -1.02
USP28-205ENST00000537706 GCGRP47871 477 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 SPINK14Q6IE38 97 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 CXorf67Q86X51 503 aaPredicted RBP8.7□□□□□ -1.02
USP28-205ENST00000537706 VWA5B2Q8N398 1253 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 MLKLQ8NB16 471 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 DTX3LQ8TDB6 740 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 METTL21AQ8WXB1 218 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 ZNF830Q96NB3 372 aaPredicted RBP8.7□□□□□ -1.02
USP28-205ENST00000537706 CSPG4P5Q96PW8 444 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 OR2A14Q96R47 310 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 HGH1Q9BTY7 390 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 PLEKHF2Q9H8W4 249 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 CDC14AQ9UNH5 594 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 FAM169AQ9Y6X4 670 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 INTS1Q8N201 2190 aaKnown RBP8.7□□□□□ -1.02
USP28-205ENST00000537706 TRIM64A6NGJ6 449 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 TRIM64BA6NI03 449 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 CLDN4O14493 209 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 MATN3O15232 486 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 CTSBP07858 339 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 CHRM5P08912 532 aaPredicted RBP8.7□□□□□ -1.02
USP28-205ENST00000537706 RALBP11234 206 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 ATP1A3P13637 1013 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 TFEBP19484 476 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 AMPD1P23109 780 aa8.7□□□□□ -1.02
USP28-205ENST00000537706 CD151P48509 253 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms