RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TCN1P20061 433 aaPredicted RBP20.1■□□□□ 0.81
VPS28-209ENST00000528142 IRF8Q02556 426 aa20.1■□□□□ 0.81
VPS28-209ENST00000528142 FOXM1Q08050 763 aa20.1■□□□□ 0.81
VPS28-209ENST00000528142 RPA4Q13156 261 aa20.1■□□□□ 0.81
VPS28-209ENST00000528142 TRIM25Q14258 630 aaKnown RBP20.1■□□□□ 0.81
VPS28-209ENST00000528142 TMEM259Q4ZIN3 620 aa20.1■□□□□ 0.81
VPS28-209ENST00000528142 FRG2Q64ET8 278 aa20.1■□□□□ 0.81
VPS28-209ENST00000528142 PRMT9Q6P2P2 845 aa20.1■□□□□ 0.81
VPS28-209ENST00000528142 LRRTM4Q86VH4 590 aa20.1■□□□□ 0.81
VPS28-209ENST00000528142 AMZ2Q86W34 360 aa20.1■□□□□ 0.81
VPS28-209ENST00000528142 OXR1Q8N573 874 aa20.1■□□□□ 0.81
VPS28-209ENST00000528142 GANCQ8TET4 914 aa20.1■□□□□ 0.81
VPS28-209ENST00000528142 MED8Q96G25 268 aa20.1■□□□□ 0.81
VPS28-209ENST00000528142 FRG2BQ96QU4 278 aa20.1■□□□□ 0.81
VPS28-209ENST00000528142 IL1RL2Q9HB29 575 aa20.1■□□□□ 0.81
VPS28-209ENST00000528142 LRRC42Q9Y546 428 aa20.1■□□□□ 0.81
VPS28-209ENST00000528142 DNMT3AQ9Y6K1 912 aaPredicted RBP20.1■□□□□ 0.81
VPS28-209ENST00000528142 E7EQ34 232 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 DNTTP04053 509 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 C7P10643 843 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 DRD1P21728 446 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 SLC6A2P23975 617 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 VHLP40337 213 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 DOC2AQ14183 400 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 TIGD2Q4W5G0 525 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 SLC15A3Q8IY34 581 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 SLC44A3Q8N4M1 653 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 SPDYE1Q8NFV5 336 aaPredicted RBP20.09■□□□□ 0.81
VPS28-209ENST00000528142 OR9A1PQ8NGU1 263 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 OR14C36Q8NHC7 312 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 C8orf33Q9H7E9 229 aaPredicted RBP20.09■□□□□ 0.81
VPS28-209ENST00000528142 BCAP29Q9UHQ4 241 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 OR1A2Q9Y585 309 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 COL4A2P08572 1712 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 YBX1P67809 324 aaKnown RBP20.09■□□□□ 0.81
VPS28-209ENST00000528142 ZNF33BQ06732 778 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 E2F2Q14209 437 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 CAPRIN1Q14444 709 aaKnown RBP20.09■□□□□ 0.81
VPS28-209ENST00000528142 USP39Q53GS9 565 aaKnown RBP20.09■□□□□ 0.81
VPS28-209ENST00000528142 XKR6Q5GH73 641 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 HABP4Q5JVS0 413 aaKnown RBP20.09■□□□□ 0.81
VPS28-209ENST00000528142 KIAA1161Q6NSJ0 714 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 SUSD1Q6UWL2 747 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 UNC5DQ6UXZ4 953 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 GALNT13Q8IUC8 556 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 LRRC56Q8IYG6 542 aaPredicted RBP20.09■□□□□ 0.81
VPS28-209ENST00000528142 BHLHE22Q8NFJ8 381 aaPredicted RBP20.09■□□□□ 0.81
VPS28-209ENST00000528142 WDR20Q8TBZ3 569 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 KLK6Q92876 244 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 WDR26Q9H7D7 661 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 KCNK12Q9HB15 430 aa20.09■□□□□ 0.81
VPS28-209ENST00000528142 ZFC3H1O60293 1989 aaKnown RBP20.08■□□□□ 0.8
VPS28-209ENST00000528142 A0A1W2PQU0 124 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 GPR89AB7ZAQ6 455 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 IFRD1O00458 451 aaPredicted RBP20.08■□□□□ 0.8
VPS28-209ENST00000528142 NME4O00746 187 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 BAG2O95816 211 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 GPR89BP0CG08 455 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 CASP2P42575 452 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 ADPRHP54922 357 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 GRSF1Q12849 480 aaKnown RBP eCLIP20.08■□□□□ 0.8
VPS28-209ENST00000528142 TRAP1Q12931 704 aaKnown RBP20.08■□□□□ 0.8
VPS28-209ENST00000528142 SGCGQ13326 291 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 NFYCQ13952 458 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 PTGR1Q14914 329 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 IER5LQ5T953 404 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 CACHD1Q5VU97 1274 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 GRHL2Q6ISB3 625 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 PDZD3Q86UT5 571 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 LIX1Q8N485 282 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 DPP10Q8N608 796 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 NUDT8Q8WV74 236 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 ANKRD27Q96NW4 1050 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 OSBPL6Q9BZF3 934 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 PCDHAC1Q9H158 963 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 TM7SF3Q9NS93 570 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 CMTM6Q9NX76 183 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 GPRC5BQ9NZH0 403 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 PCDHA9Q9Y5H5 950 aa20.08■□□□□ 0.8
VPS28-209ENST00000528142 H0YIV9 168 aa20.07■□□□□ 0.8
VPS28-209ENST00000528142 RNGTTO60942 597 aaKnown RBP20.07■□□□□ 0.8
VPS28-209ENST00000528142 BCKDHAP12694 445 aa20.07■□□□□ 0.8
VPS28-209ENST00000528142 VARSP26640 1264 aaKnown RBP20.07■□□□□ 0.8
VPS28-209ENST00000528142 HNF4AP41235 474 aa20.07■□□□□ 0.8
VPS28-209ENST00000528142 MRPS21P82921 87 aaKnown RBP20.07■□□□□ 0.8
VPS28-209ENST00000528142 MAP7D1Q3KQU3 841 aa20.07■□□□□ 0.8
VPS28-209ENST00000528142 SWT1Q5T5J6 900 aaKnown RBP20.07■□□□□ 0.8
VPS28-209ENST00000528142 METRNLQ641Q3 311 aa20.07■□□□□ 0.8
VPS28-209ENST00000528142 CMTM7Q96FZ5 175 aa20.07■□□□□ 0.8
VPS28-209ENST00000528142 SGPP1Q9BX95 441 aa20.07■□□□□ 0.8
VPS28-209ENST00000528142 SLC17A9Q9BYT1 436 aa20.07■□□□□ 0.8
VPS28-209ENST00000528142 NMRK1Q9NWW6 199 aa20.07■□□□□ 0.8
VPS28-209ENST00000528142 SCML1Q9UN30 329 aa20.07■□□□□ 0.8
VPS28-209ENST00000528142 CLGNO14967 610 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 NPPAP01160 153 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 FUCA1P04066 466 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 SMAD4Q13485 552 aaKnown RBP20.06■□□□□ 0.8
VPS28-209ENST00000528142 C6orf10Q5SRN2 563 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 CAPN13Q6MZZ7 669 aaPredicted RBP20.06■□□□□ 0.8
VPS28-209ENST00000528142 DHDDSQ86SQ9 333 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms