RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 M0R296 226 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 TLR4O00206 839 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 UGDHO60701 494 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 CTSEP14091 401 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 IRF8Q02556 426 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 CHIT1Q13231 466 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 FASTKQ14296 549 aaKnown RBP20.38■□□□□ 0.85
VPS28-208ENST00000527797 GGTA1PQ4G0N0 100 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 LACTB2Q53H82 288 aaPredicted RBP20.38■□□□□ 0.85
VPS28-208ENST00000527797 ZNF542PQ5EBM4 170 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 WDR45BQ5MNZ6 344 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 L3MBTL4Q8NA19 623 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 SETD7Q8WTS6 366 aaKnown RBP20.38■□□□□ 0.85
VPS28-208ENST00000527797 ARMCX1Q9P291 453 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 KLF15Q9UIH9 416 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 DYRK1BQ9Y463 629 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 PTGDR2Q9Y5Y4 395 aa20.38■□□□□ 0.85
VPS28-208ENST00000527797 ANKRD12Q6UB98 2062 aa20.37■□□□□ 0.85
VPS28-208ENST00000527797 ATP6AP2A0A1C7CYW4 349 aa20.37■□□□□ 0.85
VPS28-208ENST00000527797 KDM1AO60341 852 aa20.37■□□□□ 0.85
VPS28-208ENST00000527797 ATP6AP2O75787 350 aa20.37■□□□□ 0.85
VPS28-208ENST00000527797 ERGP11308 486 aa20.37■□□□□ 0.85
VPS28-208ENST00000527797 PCDH1Q08174 1060 aa20.37■□□□□ 0.85
VPS28-208ENST00000527797 BNIP1Q12981 228 aa20.37■□□□□ 0.85
VPS28-208ENST00000527797 CYP2A13Q16696 494 aa20.37■□□□□ 0.85
VPS28-208ENST00000527797 TCHHL1Q5QJ38 904 aaPredicted RBP20.37■□□□□ 0.85
VPS28-208ENST00000527797 LIPJQ5W064 366 aa20.37■□□□□ 0.85
VPS28-208ENST00000527797 IL27RAQ6UWB1 636 aa20.37■□□□□ 0.85
VPS28-208ENST00000527797 LARP4Q71RC2 724 aaKnown RBP eCLIP20.37■□□□□ 0.85
VPS28-208ENST00000527797 LPCAT2Q7L5N7 544 aa20.37■□□□□ 0.85
VPS28-208ENST00000527797 DNASE2BQ8WZ79 361 aa20.37■□□□□ 0.85
VPS28-208ENST00000527797 RAB11FIP5Q9BXF6 653 aa20.37■□□□□ 0.85
VPS28-208ENST00000527797 TCEAL2Q9H3H9 227 aaPredicted RBP20.37■□□□□ 0.85
VPS28-208ENST00000527797 RIC8BQ9NVN3 520 aa20.37■□□□□ 0.85
VPS28-208ENST00000527797 ZFC3H1O60293 1989 aaKnown RBP20.37■□□□□ 0.85
VPS28-208ENST00000527797 FFAR3O14843 346 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 GPR42O15529 346 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 ULK1O75385 1050 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 EML2O95834 649 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 KRT6AP02538 564 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 KRT6BP04259 564 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 TDGF1P13385 188 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 F3P13726 295 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 NPPBP16860 134 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 GNAZP19086 355 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 NDUFS1P28331 727 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 KRT6CP48668 564 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 UBAP2LQ14157 1087 aaKnown RBP20.36■□□□□ 0.85
VPS28-208ENST00000527797 KRT72Q14CN4 511 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 TBCCQ15814 346 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 CPSF6Q16630 551 aaKnown RBP eCLIP20.36■□□□□ 0.85
VPS28-208ENST00000527797 XKR6Q5GH73 641 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 THEMIS2Q5TEJ8 643 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 SCIMPQ6UWF3 145 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 SUSD1Q6UWL2 747 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 LONP2Q86WA8 852 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 LMNTD1Q8N9Z9 388 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 C1orf216Q8TAB5 229 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 TUBGCP3Q96CW5 907 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 TUBB6Q9BUF5 446 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 CCDC106Q9BWC9 280 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 AKTIPQ9H8T0 292 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 G3BP2Q9UN86 482 aaKnown RBP20.36■□□□□ 0.85
VPS28-208ENST00000527797 SNX6Q9UNH7 406 aa20.36■□□□□ 0.85
VPS28-208ENST00000527797 E7EQ34 232 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 MANBAO00462 879 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 PRAMEF4O60810 478 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 WFS1O76024 890 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 JUPP14923 745 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 JUNDP17535 347 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 HTR6P50406 440 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 XKR7Q5GH72 579 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 PRAMEF9Q5VWM5 478 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 TMEM198Q66K66 360 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 LCTLQ6UWM7 567 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 LAYNQ6UX15 382 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 RNF165Q6ZSG1 346 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 ARMCX6Q7L4S7 300 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 C1orf210Q8IVY1 113 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 SMPDL3AQ92484 453 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 CXorf40BQ96DE9 158 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 MENTQ9BUN1 341 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 APOBEC3BQ9UH17 382 aaKnown RBP20.35■□□□□ 0.85
VPS28-208ENST00000527797 KCNE1BA0A087WTH5 132 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 A6NCN8 305 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 UBDO15205 165 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 CSTF1Q05048 431 aaKnown RBP20.35■□□□□ 0.85
VPS28-208ENST00000527797 DOC2AQ14183 400 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 ABRAXAS2Q15018 415 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 PRAMEF14Q5SWL7 426 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 PRAMEF13Q5VWM6 474 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 CHSY3Q70JA7 882 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 TAF8Q7Z7C8 310 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 C2orf73Q8N5S3 287 aaPredicted RBP20.35■□□□□ 0.85
VPS28-208ENST00000527797 CPSF7Q8N684 471 aaKnown RBP20.35■□□□□ 0.85
VPS28-208ENST00000527797 OR52E1Q8NGJ3 308 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 NEIL2Q969S2 332 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 SH3KBP1Q96B97 665 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 CATSPER2Q96P56 530 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 HAUS8Q9BT25 410 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms