RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 ZNF655Q8N720 491 aaPredicted RBP12.87□□□□□ -0.35
TCOF1-213ENST00000514442 GOLM1Q8NBJ4 401 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 OR4A15Q8NGL6 344 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 CYB5D2Q8WUJ1 264 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 CNTN6Q9UQ52 1028 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 GNPDA1P46926 289 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 ZNF132P52740 706 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 MLLT6P55198 1093 aaPredicted RBP12.86□□□□□ -0.35
TCOF1-213ENST00000514442 GTF2H2Q13888 395 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 ATP6AP1Q15904 470 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 GTF2H2CQ6P1K8 395 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 PARGQ86W56 976 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 DIRAS2Q96HU8 199 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 TMEM175Q9BSA9 504 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 SOX17Q9H6I2 414 aaPredicted RBP12.86□□□□□ -0.35
TCOF1-213ENST00000514442 NDRG2Q9UN36 371 aaKnown RBP12.86□□□□□ -0.35
TCOF1-213ENST00000514442 PDE4DIPQ5VU43 2346 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 PDPK1O15530 556 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 OR7A10O76100 309 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 AQP1P29972 269 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 LCP2Q13094 533 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 RUNDC3AQ59EK9 446 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 MS4A13Q5J8X5 152 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 GPRIN1Q7Z2K8 1008 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 LRRC58Q96CX6 371 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 RNFT2Q96EX2 444 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 MED30Q96HR3 178 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 ZBED3Q96IU2 234 aaPredicted RBP12.86□□□□□ -0.35
TCOF1-213ENST00000514442 ITCHQ96J02 903 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 NUDT4Q9NZJ9 180 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 PFDN2Q9UHV9 154 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 POU2F3Q9UKI9 436 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 IGKV6D-21A0A0A0MT36 114 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 FAM72CH0Y354 149 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 IQCF3P0C7M6 154 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 GPR17Q13304 367 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 SPATS1Q496A3 300 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 FAM72AQ5TYM5 149 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 FAM72DQ6L9T8 149 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 FAM72BQ86X60 149 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 PPCDCQ96CD2 204 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 NARS2Q96I59 477 aaKnown RBP12.86□□□□□ -0.35
TCOF1-213ENST00000514442 RNF186Q9NXI6 227 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 LOC100130705A0A1B0GUX0 176 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 A8MU76 341 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 PIP5K1BO14986 540 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 SSNA1O43805 119 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 NIPSNAP2O75323 286 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 TRBC1P01850 177 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 NR2F1P10589 423 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 CDH5P33151 784 aaPredicted RBP12.86□□□□□ -0.35
TCOF1-213ENST00000514442 GABARAPL2P60520 117 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 FOXM1Q08050 763 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 GPM6BQ13491 265 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 TIGD6Q17RP2 521 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 MSANTD2Q6P1R3 559 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 TMEM220Q6QAJ8 160 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 RERGQ96A58 199 aaPredicted RBP12.86□□□□□ -0.35
TCOF1-213ENST00000514442 C8orf48Q96LL4 319 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 ITM2CQ9NQX7 267 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 PDP1Q9P0J1 537 aaPredicted RBP12.86□□□□□ -0.35
TCOF1-213ENST00000514442 SLC27A6Q9Y2P4 619 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 KCTD3Q9Y597 815 aa12.86□□□□□ -0.35
TCOF1-213ENST00000514442 TMEM233B4DJY2 109 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 MTX2O75431 263 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 DHFRP00374 187 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 ERVK-21P61565 698 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 SF1Q15637 639 aaKnown RBP12.85□□□□□ -0.35
TCOF1-213ENST00000514442 C14orf80Q86SX3 495 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 CYP4Z2PQ8N1L4 340 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 WDR36Q8NI36 951 aaKnown RBP12.85□□□□□ -0.35
TCOF1-213ENST00000514442 VPS35Q96QK1 796 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 BCL7BQ9BQE9 202 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 MROQ9BYG7 248 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 MED28Q9H204 178 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 ADAMTS5Q9UNA0 930 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 MYH7P12883 1935 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 ORC5O43913 435 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 BCAS1O75363 584 aaPredicted RBP12.85□□□□□ -0.35
TCOF1-213ENST00000514442 PGRP06401 933 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 HAPLN1P10915 354 aaPredicted RBP12.85□□□□□ -0.35
TCOF1-213ENST00000514442 GTF2E2P29084 291 aaKnown RBP12.85□□□□□ -0.35
TCOF1-213ENST00000514442 SSR2P43308 183 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 HCAR3P49019 387 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 RAB6CQ53S08 254 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 TTC29Q8NA56 475 aaPredicted RBP12.85□□□□□ -0.35
TCOF1-213ENST00000514442 RAB6CQ9H0N0 254 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 TESMINQ9Y4I5 508 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 ABHD14A-ACY1A0A1B0GW23 586 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 SLC31A1O15431 190 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 INMTO95050 263 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 CLDN9O95484 217 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 MYL12AP19105 171 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 CD40LGP29965 261 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 PTGER3P43115 390 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 ARSFP54793 590 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 SF3B4Q15427 424 aaKnown RBP eCLIP12.85□□□□□ -0.351e-6■■■■□ 20
TCOF1-213ENST00000514442 SYT16Q17RD7 645 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 SNAP47Q5SQN1 464 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 ERICH5Q6P6B1 374 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms