RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TAP2Q03519 686 aa28.63■■■□□ 2.17
LIMCH1-211ENST00000509638 AGTRAPQ6RW13 159 aa28.63■■■□□ 2.17
LIMCH1-211ENST00000509638 SUSD1Q6UWL2 747 aa28.63■■■□□ 2.17
LIMCH1-211ENST00000509638 FAM92BQ6ZTR7 304 aa28.63■■■□□ 2.17
LIMCH1-211ENST00000509638 ATL1Q8WXF7 558 aa28.63■■■□□ 2.17
LIMCH1-211ENST00000509638 SMPDL3AQ92484 453 aa28.63■■■□□ 2.17
LIMCH1-211ENST00000509638 PGM2Q96G03 612 aa28.63■■■□□ 2.17
LIMCH1-211ENST00000509638 ZDHHC12Q96GR4 267 aa28.63■■■□□ 2.17
LIMCH1-211ENST00000509638 NUDT4Q9NZJ9 180 aa28.63■■■□□ 2.17
LIMCH1-211ENST00000509638 CD274Q9NZQ7 290 aa28.63■■■□□ 2.17
LIMCH1-211ENST00000509638 ENTPD2Q9Y5L3 495 aa28.63■■■□□ 2.17
LIMCH1-211ENST00000509638 SYCE1LA8MT33 242 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 COPEO14579 308 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 C9P02748 559 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 RBP1P09455 135 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 SLC18A2Q05940 514 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 KIR2DS3Q14952 304 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 CDCP2Q5VXM1 449 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 TMEM71Q6P5X7 295 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 ZNF574Q6ZN55 896 aaPredicted RBP28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 CDHR3Q6ZTQ4 885 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 B3GNT8Q7Z7M8 397 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 PDPRQ8NCN5 879 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 MED8Q96G25 268 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 ATG10Q9H0Y0 220 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 MRPL46Q9H2W6 279 aaKnown RBP28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 VIPAS39Q9H9C1 493 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 TMEM216Q9P0N5 145 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 ISM1B1AKI9 464 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 S100BP04271 92 aaPredicted RBP28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 UGT2B7P16662 529 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 PSMB5P28074 263 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 SNAP47Q5SQN1 464 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 SPESP1Q6UW49 350 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 SLITRK4Q8IW52 837 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 LRRC56Q8IYG6 542 aaPredicted RBP28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 ADAMTS14Q8WXS8 1223 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 RHBDF1Q96CC6 855 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 APOPT1Q96IL0 206 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 MRPL57Q9BQC6 102 aaKnown RBP28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 SEMA6CQ9H3T2 930 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 CCDC177Q9NQR7 707 aaPredicted RBP28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 SENP1Q9P0U3 644 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 CPSF2Q9P2I0 782 aaKnown RBP28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 DCDC2Q9UHG0 476 aa28.62■■■□□ 2.17
LIMCH1-211ENST00000509638 ADAMTS20P59510 1910 aa28.61■■■□□ 2.17
LIMCH1-211ENST00000509638 IGHV5-10-1A0A0J9YXX1 117 aa28.61■■■□□ 2.17
LIMCH1-211ENST00000509638 A0A1W2PPV9 198 aa28.61■■■□□ 2.17
LIMCH1-211ENST00000509638 THRAP10827 490 aa28.61■■■□□ 2.17
LIMCH1-211ENST00000509638 HNMTP50135 292 aa28.61■■■□□ 2.17
LIMCH1-211ENST00000509638 N4BP2L1Q5TBK1 243 aaPredicted RBP28.61■■■□□ 2.17
LIMCH1-211ENST00000509638 C16orf46Q6P387 395 aa28.61■■■□□ 2.17
LIMCH1-211ENST00000509638 FLVCR1-AS1Q8TAF5 88 aa28.61■■■□□ 2.17
LIMCH1-211ENST00000509638 SLC22A18Q96BI1 424 aa28.61■■■□□ 2.17
LIMCH1-211ENST00000509638 CCDC74BQ96LY2 380 aa28.61■■■□□ 2.17
LIMCH1-211ENST00000509638 OR2A14Q96R47 310 aa28.61■■■□□ 2.17
LIMCH1-211ENST00000509638 SMC6Q96SB8 1091 aa28.61■■■□□ 2.17
LIMCH1-211ENST00000509638 ABCF3Q9NUQ8 709 aa28.61■■■□□ 2.17
LIMCH1-211ENST00000509638 MKS1Q9NXB0 559 aa28.61■■■□□ 2.17
LIMCH1-211ENST00000509638 AGPSO00116 658 aa28.6■■■□□ 2.17
LIMCH1-211ENST00000509638 KIF1CO43896 1103 aaKnown RBP28.6■■■□□ 2.17
LIMCH1-211ENST00000509638 RASSF9O75901 435 aa28.6■■■□□ 2.17
LIMCH1-211ENST00000509638 MTHFD2P13995 350 aa28.6■■■□□ 2.17
LIMCH1-211ENST00000509638 PRDX3P30048 256 aaKnown RBP28.6■■■□□ 2.17
LIMCH1-211ENST00000509638 CRHR1P34998 444 aa28.6■■■□□ 2.17
LIMCH1-211ENST00000509638 NAE1Q13564 534 aa28.6■■■□□ 2.17
LIMCH1-211ENST00000509638 ZXDCQ2QGD7 858 aaPredicted RBP28.6■■■□□ 2.17
LIMCH1-211ENST00000509638 TNFAIP8L3Q5GJ75 292 aa28.6■■■□□ 2.17
LIMCH1-211ENST00000509638 PHF19Q5T6S3 580 aa28.6■■■□□ 2.17
LIMCH1-211ENST00000509638 TRIM73Q86UV7 250 aa28.6■■■□□ 2.17
LIMCH1-211ENST00000509638 PPM1MQ96MI6 270 aa28.6■■■□□ 2.17
LIMCH1-211ENST00000509638 CD180Q99467 661 aa28.6■■■□□ 2.17
LIMCH1-211ENST00000509638 WWOXQ9NZC7 414 aa28.6■■■□□ 2.17
LIMCH1-211ENST00000509638 CLCA2Q9UQC9 943 aa28.6■■■□□ 2.17
LIMCH1-211ENST00000509638 TLCD2A6NGC4 264 aa28.59■■■□□ 2.17
LIMCH1-211ENST00000509638 MT-CO3P00414 261 aa28.59■■■□□ 2.17
LIMCH1-211ENST00000509638 RPA3P35244 121 aaPredicted RBP28.59■■■□□ 2.17
LIMCH1-211ENST00000509638 CCT5P48643 541 aa28.59■■■□□ 2.17
LIMCH1-211ENST00000509638 CDKL4Q5MAI5 379 aa28.59■■■□□ 2.17
LIMCH1-211ENST00000509638 BANPQ8N9N5 519 aa28.59■■■□□ 2.17
LIMCH1-211ENST00000509638 ALKBH8Q96BT7 664 aaKnown RBP28.59■■■□□ 2.17
LIMCH1-211ENST00000509638 PYCR2Q96C36 320 aa28.59■■■□□ 2.17
LIMCH1-211ENST00000509638 DEPDC7Q96QD5 511 aa28.59■■■□□ 2.17
LIMCH1-211ENST00000509638 MAP3K3Q99759 626 aa28.59■■■□□ 2.17
LIMCH1-211ENST00000509638 ACAT2Q9BWD1 397 aa28.59■■■□□ 2.17
LIMCH1-211ENST00000509638 STMN4Q9H169 189 aaPredicted RBP28.59■■■□□ 2.17
LIMCH1-211ENST00000509638 EMCNQ9ULC0 261 aa28.59■■■□□ 2.17
LIMCH1-211ENST00000509638 PRICKLE3O43900 615 aaPredicted RBP28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 SASH3O75995 380 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 GFAPP14136 432 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 OAS2P29728 719 aaKnown RBP28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 KIF26BQ2KJY2 2108 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 C18orf21Q32NC0 220 aaPredicted RBP28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 FBXO48Q5FWF7 155 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 THEMIS2Q5TEJ8 643 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 SULT1C3Q6IMI6 304 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 TCAIMQ8N3R3 496 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 RCBTB1Q8NDN9 531 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 OR56A3Q8NH54 315 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 TMEM79Q9BSE2 394 aa28.58■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms