RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 AFAP1Q8N556 730 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 L3MBTL4Q8NA19 623 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 POMGNT2Q8NAT1 580 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 PPFIBP2Q8ND30 876 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 PAPD5Q8NDF8 572 aaKnown RBP3.18□□□□□ -1.9
VPS50-219ENST00000495039 PRSS33Q8NF86 280 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 EXD1Q8NHP7 514 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 ZFAND2BQ8WV99 257 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 GTF3AQ92664 365 aaKnown RBP3.18□□□□□ -1.9
VPS50-219ENST00000495039 SLF1Q9BQI6 1058 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 FNDC11Q9BVV2 318 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 CCDC106Q9BWC9 280 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 INTS9Q9NV88 658 aaKnown RBP3.18□□□□□ -1.9
VPS50-219ENST00000495039 GDE1Q9NZC3 331 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 WBP11Q9Y2W2 641 aaKnown RBP3.18□□□□□ -1.9
VPS50-219ENST00000495039 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.18□□□□□ -1.9
VPS50-219ENST00000495039 FAM169AQ9Y6X4 670 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 A0A1W2PPR1 153 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 EPM2AB3EWF7 344 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 MED24O75448 989 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 IGHV3-13P01766 116 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 ITIH1P19827 911 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 CBLP22681 906 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 NKX2-1P43699 371 aaPredicted RBP3.17□□□□□ -1.9
VPS50-219ENST00000495039 CDH13P55290 713 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 NUCB1Q02818 461 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 CBWD6Q4V339 395 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 CBWD3Q5JTY5 395 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 TMEM211Q6ICI0 200 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 NAA16Q6N069 864 aaPredicted RBP3.17□□□□□ -1.9
VPS50-219ENST00000495039 TEX38Q6PEX7 206 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 CRYBG2Q8N1P7 616 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 POGLUT1Q8NBL1 392 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 TSPAN14Q8NG11 270 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 OR10S1Q8NGN2 331 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 MOSPD2Q8NHP6 518 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 HPSE2Q8WWQ2 592 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 SPACA9Q96E40 222 aaPredicted RBP3.17□□□□□ -1.9
VPS50-219ENST00000495039 MS4A10Q96PG2 267 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 USP28Q96RU2 1077 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 FUCA2Q9BTY2 467 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 ABHD6Q9BV23 337 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 WWTR1Q9GZV5 400 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 OPA3Q9H6K4 179 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 NKIRAS2Q9NYR9 191 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 STK26Q9P289 416 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 RHCGQ9UBD6 479 aa3.17□□□□□ -1.9
VPS50-219ENST00000495039 CRNNQ9UBG3 495 aaPredicted RBP3.17□□□□□ -1.9
VPS50-219ENST00000495039 SPIN1Q9Y657 262 aaPredicted RBP3.17□□□□□ -1.9
VPS50-219ENST00000495039 ANKUB1A6NFN9 424 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 ATP6V0E1O15342 81 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 P4HA2O15460 535 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 ZSCAN5DPP0CG00 497 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 ACP2P11117 423 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 PFKFB1P16118 471 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 DNASE1P24855 282 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 RBMS1P29558 406 aaKnown RBP3.16□□□□□ -1.9
VPS50-219ENST00000495039 SLC9A3P48764 834 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 KCTD2Q14681 263 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 E2F5Q15329 346 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 TMEM266Q2M3C6 531 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 MDH1BQ5I0G3 518 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 FAM114A1Q8IWE2 563 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 OR2AJ1Q8NGZ0 328 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 NSL1Q96IY1 281 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 DGAT2Q96PD7 388 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 TRAF4Q9BUZ4 470 aaPredicted RBP3.16□□□□□ -1.9
VPS50-219ENST00000495039 DPAGT1Q9H3H5 408 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 GOLPH3LQ9H4A5 285 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 ACKR4Q9NPB9 350 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 TAB2Q9NYJ8 693 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 DDX25Q9UHL0 483 aaKnown RBP3.16□□□□□ -1.9
VPS50-219ENST00000495039 GRIP1Q9Y3R0 1128 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 TRPV2Q9Y5S1 764 aa3.16□□□□□ -1.9
VPS50-219ENST00000495039 TCRBV21S2A2A0A5A6 115 aa3.15□□□□□ -1.91
VPS50-219ENST00000495039 KLF11O14901 512 aa3.15□□□□□ -1.91
VPS50-219ENST00000495039 ADRB2P07550 413 aa3.15□□□□□ -1.91
VPS50-219ENST00000495039 HSP90AA1P07900 732 aaKnown RBP3.15□□□□□ -1.91
VPS50-219ENST00000495039 OR2T7P0C7T2 308 aa3.15□□□□□ -1.91
VPS50-219ENST00000495039 IL11P20809 199 aa3.15□□□□□ -1.91
VPS50-219ENST00000495039 KRT20P35900 424 aa3.15□□□□□ -1.91
VPS50-219ENST00000495039 CAPZA2P47755 286 aa3.15□□□□□ -1.91
VPS50-219ENST00000495039 GSCP56915 257 aaPredicted RBP3.15□□□□□ -1.91
VPS50-219ENST00000495039 PNRC1Q12796 327 aaPredicted RBP3.15□□□□□ -1.91
VPS50-219ENST00000495039 AIMP1Q12904 312 aaKnown RBP3.15□□□□□ -1.91
VPS50-219ENST00000495039 NFATC2Q13469 925 aa3.15□□□□□ -1.91
VPS50-219ENST00000495039 SNTB1Q13884 538 aaKnown RBP3.15□□□□□ -1.91
VPS50-219ENST00000495039 C9orf152Q5JTZ5 239 aa3.15□□□□□ -1.91
VPS50-219ENST00000495039 GRTP1Q5TC63 336 aa3.15□□□□□ -1.91
VPS50-219ENST00000495039 FIP1L1Q6UN15 594 aaKnown RBP3.15□□□□□ -1.91
VPS50-219ENST00000495039 COMMD2Q86X83 199 aa3.15□□□□□ -1.91
VPS50-219ENST00000495039 OR8H2Q8N162 312 aa3.15□□□□□ -1.91
VPS50-219ENST00000495039 DCLK2Q8N568 766 aa3.15□□□□□ -1.91
VPS50-219ENST00000495039 CPSF7Q8N684 471 aaKnown RBP3.15□□□□□ -1.91
VPS50-219ENST00000495039 POM121L12Q8N7R1 296 aa3.15□□□□□ -1.91
VPS50-219ENST00000495039 LSMEM1Q8N8F7 131 aa3.15□□□□□ -1.91
VPS50-219ENST00000495039 OR5M8Q8NGP6 311 aa3.15□□□□□ -1.91
VPS50-219ENST00000495039 CFAP61Q8NHU2 1237 aa3.15□□□□□ -1.91
VPS50-219ENST00000495039 RNF128Q8TEB7 428 aa3.15□□□□□ -1.91
VPS50-219ENST00000495039 DYRK2Q92630 601 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms