RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 S1PR4O95977 384 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 ITGAXP20702 1163 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 ARNTP27540 789 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 PSMB5P28074 263 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 CXCR5P32302 372 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 NPY2RP49146 381 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 VPS41P49754 854 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 SSPNQ14714 243 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 TRIP13Q15645 432 aaPredicted RBP20.7■□□□□ 0.9
USP40-215ENST00000484528 CTSL3PQ5NE16 218 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 MRPL14Q6P1L8 145 aaKnown RBP20.7■□□□□ 0.9
USP40-215ENST00000484528 FIGLAQ6QHK4 219 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 OTOAQ7RTW8 1153 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 PPP1R32Q7Z5V6 425 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 METTL27Q8N6F8 245 aaPredicted RBP20.7■□□□□ 0.9
USP40-215ENST00000484528 GALNT11Q8NCW6 608 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 UBE2Q2Q8WVN8 375 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 SLC22A18Q96BI1 424 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 SLAMF7Q9NQ25 335 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 P4HTMQ9NXG6 502 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 HEATR5BQ9P2D3 2071 aa20.69■□□□□ 0.9
USP40-215ENST00000484528 BLACEA4D250 179 aa20.69■□□□□ 0.9
USP40-215ENST00000484528 PEX12O00623 359 aa20.69■□□□□ 0.9
USP40-215ENST00000484528 NIPSNAP2O75323 286 aa20.69■□□□□ 0.9
USP40-215ENST00000484528 UMODP07911 640 aa20.69■□□□□ 0.9
USP40-215ENST00000484528 CCDC175P0C221 793 aa20.69■□□□□ 0.9
USP40-215ENST00000484528 GCGRP47871 477 aa20.69■□□□□ 0.9
USP40-215ENST00000484528 INPP5JQ15735 1006 aaPredicted RBP20.69■□□□□ 0.9
USP40-215ENST00000484528 DCAF10Q5QP82 559 aa20.69■□□□□ 0.9
USP40-215ENST00000484528 TTC23LQ6PF05 361 aa20.69■□□□□ 0.9
USP40-215ENST00000484528 CLEC1AQ8NC01 280 aa20.69■□□□□ 0.9
USP40-215ENST00000484528 ZDHHC19Q8WVZ1 309 aaPredicted RBP20.69■□□□□ 0.9
USP40-215ENST00000484528 IP6K3Q96PC2 410 aa20.69■□□□□ 0.9
USP40-215ENST00000484528 SMAD5Q99717 465 aaKnown RBP20.69■□□□□ 0.9
USP40-215ENST00000484528 INTS7Q9NVH2 962 aaKnown RBP20.69■□□□□ 0.9
USP40-215ENST00000484528 A0A1B0GX78 115 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 C1orf105O95561 183 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 RPS3P23396 243 aaKnown RBP eCLIP20.68■□□□□ 0.9
USP40-215ENST00000484528 FMO4P31512 558 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 VWA5B1Q5TIE3 1220 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 C4orf22Q6V702 233 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 LRRC6Q86X45 466 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 MPP5Q8N3R9 675 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 GALNT16Q8N428 558 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 DTWD1Q8N5C7 304 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 MAIP1Q8WWC4 291 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 DLG3Q92796 817 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 RAD51AP1Q96B01 352 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 PTERQ96BW5 349 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 FER1L6-AS2Q96M78 137 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 MIPEPQ99797 713 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 SELENOSQ9BQE4 189 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 KIFC1Q9BW19 673 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 RAB11FIP5Q9BXF6 653 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 ZKSCAN5Q9Y2L8 839 aa20.68■□□□□ 0.9
USP40-215ENST00000484528 PRICKLE3O43900 615 aaPredicted RBP20.67■□□□□ 0.9
USP40-215ENST00000484528 NRP2O60462 931 aa20.67■□□□□ 0.9
USP40-215ENST00000484528 ALOX12BO75342 701 aa20.67■□□□□ 0.9
USP40-215ENST00000484528 TPSB2P20231 275 aa20.67■□□□□ 0.9
USP40-215ENST00000484528 TPSAB1Q15661 275 aa20.67■□□□□ 0.9
USP40-215ENST00000484528 CYP2A13Q16696 494 aa20.67■□□□□ 0.9
USP40-215ENST00000484528 LRRC8BQ6P9F7 803 aa20.67■□□□□ 0.9
USP40-215ENST00000484528 SHISA6Q6ZSJ9 500 aa20.67■□□□□ 0.9
USP40-215ENST00000484528 DENND1AQ8TEH3 1009 aa20.67■□□□□ 0.9
USP40-215ENST00000484528 LPGAT1Q92604 370 aa20.67■□□□□ 0.9
USP40-215ENST00000484528 PNPLA2Q96AD5 504 aa20.67■□□□□ 0.9
USP40-215ENST00000484528 BIRC8Q96P09 236 aa20.67■□□□□ 0.9
USP40-215ENST00000484528 TRIM56Q9BRZ2 755 aaKnown RBP20.67■□□□□ 0.9
USP40-215ENST00000484528 CUTCQ9NTM9 273 aa20.67■□□□□ 0.9
USP40-215ENST00000484528 AP3B1O00203 1094 aa20.66■□□□□ 0.9
USP40-215ENST00000484528 KPNA5O15131 536 aa20.66■□□□□ 0.9
USP40-215ENST00000484528 CTSVO60911 334 aa20.66■□□□□ 0.9
USP40-215ENST00000484528 AVILO75366 819 aa20.66■□□□□ 0.9
USP40-215ENST00000484528 AGFG2O95081 481 aa20.66■□□□□ 0.9
USP40-215ENST00000484528 F7P08709 466 aaPredicted RBP20.66■□□□□ 0.9
USP40-215ENST00000484528 CD63P08962 238 aa20.66■□□□□ 0.9
USP40-215ENST00000484528 GP1BBP13224 206 aa20.66■□□□□ 0.9
USP40-215ENST00000484528 ARSFP54793 590 aa20.66■□□□□ 0.9
USP40-215ENST00000484528 VSX2P58304 361 aaPredicted RBP20.66■□□□□ 0.9
USP40-215ENST00000484528 MYBPC3Q14896 1274 aa20.66■□□□□ 0.9
USP40-215ENST00000484528 ZC3H12BQ5HYM0 836 aaKnown RBP20.66■□□□□ 0.9
USP40-215ENST00000484528 MRNIPQ6NTE8 343 aa20.66■□□□□ 0.9
USP40-215ENST00000484528 COX15Q7KZN9 410 aa20.66■□□□□ 0.9
USP40-215ENST00000484528 HPS6Q86YV9 775 aa20.66■□□□□ 0.9
USP40-215ENST00000484528 PRELID2Q8N945 189 aa20.66■□□□□ 0.9
USP40-215ENST00000484528 MRM3Q9HC36 420 aaKnown RBP20.66■□□□□ 0.9
USP40-215ENST00000484528 IL1RAPL1Q9NZN1 696 aa20.66■□□□□ 0.9
USP40-215ENST00000484528 SOX13Q9UN79 622 aa20.66■□□□□ 0.9
USP40-215ENST00000484528 CRYL1Q9Y2S2 319 aa20.66■□□□□ 0.9
USP40-215ENST00000484528 DSCR3O14972 297 aa20.65■□□□□ 0.9
USP40-215ENST00000484528 OR1D4P47884 311 aa20.65■□□□□ 0.9
USP40-215ENST00000484528 YBX1P67809 324 aaKnown RBP20.65■□□□□ 0.9
USP40-215ENST00000484528 GRM7Q14831 915 aa20.65■□□□□ 0.9
USP40-215ENST00000484528 TYSND1Q2T9J0 566 aa20.65■□□□□ 0.9
USP40-215ENST00000484528 FRMPD2BQ6IN97 320 aa20.65■□□□□ 0.9
USP40-215ENST00000484528 SDCCAG8Q86SQ7 713 aaPredicted RBP20.65■□□□□ 0.9
USP40-215ENST00000484528 SPNS2Q8IVW8 549 aa20.65■□□□□ 0.9
USP40-215ENST00000484528 RAB42Q8N4Z0 105 aa20.65■□□□□ 0.9
USP40-215ENST00000484528 TTC29Q8NA56 475 aaPredicted RBP20.65■□□□□ 0.9
USP40-215ENST00000484528 TRIM58Q8NG06 486 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms