RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 GCNT3O95395 438 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 GGPS1O95749 300 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 GABRA5P31644 462 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 MC5RP33032 325 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 RAD23AP54725 363 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 SP3Q02447 781 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 FAM133BQ5BKY9 247 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 C6orf163Q5TEZ5 329 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 KRT80Q6KB66 452 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 GPRIN3Q6ZVF9 776 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 LRRTM1Q86UE6 522 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 ZNF584Q8IVC4 421 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 GPALPP1Q8IXQ4 340 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 Q8NFD4 153 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 OR2T12Q8NG77 320 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 OR6J1Q8NGC5 347 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 OLIG1Q8TAK6 271 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 VPS33AQ96AX1 596 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 NXNL1Q96CM4 212 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 RMDN1Q96DB5 314 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 FAM81BQ96LP2 452 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 ZMAT2Q96NC0 199 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 ZNF582Q96NG8 517 aaPredicted RBP2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 PITPNM3Q9BZ71 974 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 ST6GALNAC4Q9H4F1 302 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 SLA2Q9H6Q3 261 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 OLFML3Q9NRN5 406 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 DDX25Q9UHL0 483 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 TDRD15B5MCY1 1934 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 IGHV4-4A0A075B6R2 117 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 DIAPH2O60879 1101 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 TOMM70O94826 608 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 C22orf31O95567 290 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 TRUB2O95900 331 aaKnown RBP2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 H1F0P07305 194 aaKnown RBP2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 PFKFB1P16118 471 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 MMP15P51511 669 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 LIMK2P53671 638 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 CSE1LP55060 971 aaKnown RBP2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 CDK3Q00526 305 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 MFAP5Q13361 173 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 PSMD6Q15008 389 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 SGSM1Q2NKQ1 1148 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 SPECC1Q5M775 1068 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 RBPMS2Q6ZRY4 209 aaKnown RBP2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 TMEM173Q86WV6 379 aaPredicted RBP2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 KRTAP11-1Q8IUC1 163 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 RAB42Q8N4Z0 105 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 AFAP1Q8N556 730 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 XXYLT1Q8NBI6 393 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 OR2AJ1Q8NGZ0 328 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 EXD1Q8NHP7 514 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 SMPDL3BQ92485 455 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 SUSD6Q92537 303 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 SEMA4DQ92854 862 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 SPACA9Q96E40 222 aaPredicted RBP2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 MS4A10Q96PG2 267 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 OPA3Q9H6K4 179 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 HHATLQ9HCP6 504 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 EQTNQ9NQ60 294 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 RNF186Q9NXI6 227 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 PTTG2Q9NZH5 202 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 NPAP1Q9NZP6 1156 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 RHCGQ9UBD6 479 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 OSGIN1Q9UJX0 560 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 SLC7A7Q9UM01 511 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 MOB4Q9Y3A3 225 aa2.72□□□□□ -1.97
CCDC88A-212ENST00000474059 EDDM13A0A1B0GTR0 161 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 PRSS51A0A1B0GVH4 220 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 A0A1W2PPM1 405 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 FEZF1A0PJY2 475 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 ANKUB1A6NFN9 424 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 SLCO2B1O94956 709 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 FYNP06241 537 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 LINGO3P0C6S8 592 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 ZNF41P51814 821 aaPredicted RBP2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 HNRNPKP61978 463 aaKnown RBP eCLIP2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 RALGDSQ12967 914 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 NR1D2Q14995 579 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 TEAD2Q15562 447 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 GCNT6Q5T4J0 391 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 RNASEH2BQ5TBB1 312 aaKnown RBP2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 CST9LP1Q5W188 147 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 FAM198BQ6UWH4 519 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 CHST3Q7LGC8 479 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 KRT77Q7Z794 578 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 IQCHQ86VS3 1027 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 PTOV1Q86YD1 416 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 PAPD5Q8NDF8 572 aaKnown RBP2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 PRSS33Q8NF86 280 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 ARSGQ96EG1 525 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 CFAP57Q96MR6 1250 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 ABHD6Q9BV23 337 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 FNDC11Q9BVV2 318 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 P2RY12Q9H244 342 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 DPAGT1Q9H3H5 408 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 ANKZF1Q9H8Y5 726 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 CNOT10Q9H9A5 744 aaKnown RBP2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 PRMT7Q9NVM4 692 aaPredicted RBP2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 OSER1Q9NX31 292 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms