RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 BPIFB1Q8TDL5 484 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 CYP2S1Q96SQ9 504 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 ZNF717Q9BY31 904 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-209ENST00000472056 BRD7Q9NPI1 651 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 MOCS1Q9NZB8 636 aa13.05□□□□□ -0.32
COL6A3-209ENST00000472056 MT-ND2P03891 347 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 CYP3A5P20815 502 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 SOX9P48436 509 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 ANKRD22Q5VYY1 191 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 TMPRSS11BQ86T26 416 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 PLD5Q8N7P1 536 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 TMEM80Q96HE8 168 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 OR6C75A6NL08 312 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 A8MUI8 341 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 H3BM21 787 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 IFNA4P05014 189 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 CDH12P55289 794 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 ZC3H12AQ5D1E8 599 aaKnown RBP13.04□□□□□ -0.32
COL6A3-209ENST00000472056 TMCO2Q7Z6W1 182 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-209ENST00000472056 ZNF781Q8N8C0 355 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 EPYCQ99645 322 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 MTFR1LQ9H019 292 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 SYT4Q9H2B2 425 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 ASAH2Q9NR71 780 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 COMMD3Q9UBI1 195 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 KNDC1Q76NI1 1749 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 NPEPPSL1A6NEC2 478 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 EI24O14681 340 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 VARSP26640 1264 aaKnown RBP13.04□□□□□ -0.32
COL6A3-209ENST00000472056 ETV6P41212 452 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 C3P1Q6ZMU1 363 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 ASB12Q8WXK4 309 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 BTF3L4Q96K17 158 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 CSPG4P5Q96PW8 444 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 HAPLN3Q96S86 360 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 OSMRQ99650 979 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 FUZQ9BT04 418 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 PTPRHQ9HD43 1115 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 ASF1AQ9Y294 204 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 GLYATL1P3A0A0U1RQE8 302 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 TRIM64A6NGJ6 449 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 PI15O43692 258 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 CSN2P05814 226 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 CDK2P24941 298 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 GNMTQ14749 295 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 TAS2R14Q9NYV8 317 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 ACTA2P62736 377 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 ACTG2P63267 376 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 TAF1AQ15573 450 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-209ENST00000472056 CIDECQ96AQ7 238 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-209ENST00000472056 MOAP1Q96BY2 351 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 HNRNPABQ99729 332 aaKnown RBP13.04□□□□□ -0.32
COL6A3-209ENST00000472056 SDCBP2Q9H190 292 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 TNKS2Q9H2K2 1166 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 DENRO43583 198 aaKnown RBP13.04□□□□□ -0.32
COL6A3-209ENST00000472056 NCK1P16333 377 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 OR2L8Q8NGY9 312 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 SLC22A18Q96BI1 424 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 RETREG1Q9H6L5 497 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 C11orf16Q9NQ32 467 aa13.04□□□□□ -0.32
COL6A3-209ENST00000472056 DNAJC13O75165 2243 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 RHOQP17081 205 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 AMD1P17707 334 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 NECAB3Q96P71 396 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-209ENST00000472056 LGMNQ99538 433 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 ZNF696Q9H7X3 374 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 IPPKQ9H8X2 491 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.03□□□□□ -0.32
COL6A3-209ENST00000472056 SOHLH2Q9NX45 425 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 MAT2BQ9NZL9 334 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 C1orf196B1AJZ1 125 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 AMHP03971 560 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 COL6A1P12109 1028 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 FPR1P21462 350 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 NKX1-1Q15270 411 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-209ENST00000472056 TBC1D25Q3MII6 688 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 FAM120CQ9NX05 1096 aaKnown RBP13.03□□□□□ -0.32
COL6A3-209ENST00000472056 EDARQ9UNE0 448 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 TSPAN1O60635 241 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 IMPDH1P20839 514 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 BMP6P22004 513 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 CMPK1P30085 196 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 CPT1BQ92523 772 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 DMRTB1Q96MA1 342 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 MRPL45Q9BRJ2 306 aaKnown RBP13.03□□□□□ -0.32
COL6A3-209ENST00000472056 MAGEH1Q9H213 219 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 AP1M2Q9Y6Q5 423 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 CAPN14A8MX76 684 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 SSX4O60224 188 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 ZNF20P17024 532 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 FECHP22830 423 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 ABL2P42684 1182 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 MARCKSL1P49006 195 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 ZNF81P51508 661 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 DOK6Q6PKX4 331 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 GDPGP1Q6ZNW5 385 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 TMEM139Q8IV31 216 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 DENND1AQ8TEH3 1009 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 ZNF317Q96PQ6 595 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-209ENST00000472056 FBXL21Q9UKT6 434 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms