RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 GNA12Q03113 381 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 LAMC2Q13753 1193 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 NRF1Q16656 503 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 ANKS6Q68DC2 871 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 TMEM214Q6NUQ4 689 aaKnown RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 SLC27A1Q6PCB7 646 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 FAM9CQ8IZT9 166 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 CBARPQ8N350 705 aaPredicted RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 DNAJC22Q8N4W6 341 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 RAB42Q8N4Z0 105 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 FAM86B1Q8N7N1 296 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 IPMKQ8NFU5 416 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 ADAMTS14Q8WXS8 1223 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 SORCS2Q96PQ0 1159 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 ATP13A2Q9NQ11 1180 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 INTS7Q9NVH2 962 aaKnown RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 A0A096LPI6 279 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 H3BNC9 293 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 QSOX1O00391 747 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 ANGPT2O15123 496 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 MAN1A2O60476 641 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 INMTO95050 263 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 POMCP01189 267 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 TPTEP56180 551 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 BTG1P62324 171 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 UAP1L1Q3KQV9 507 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 TRIM60Q495X7 471 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 PAN2Q504Q3 1202 aaKnown RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 SLC35F1Q5T1Q4 408 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 NXNL2Q5VZ03 156 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 EIF3MQ7L2H7 374 aaKnown RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 ADCK2Q7Z695 626 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 MRPL10Q7Z7H8 261 aaKnown RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 B3GNT8Q7Z7M8 397 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 GPRC5AQ8NFJ5 357 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 TRIM62Q9BVG3 475 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 DPEP3Q9H4B8 488 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 LIN7BQ9HAP6 207 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 NEK6Q9HC98 313 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 PRDM8Q9NQV8 689 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 VNN3Q9NY84 501 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 FTSJ1Q9UET6 329 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 NEDD8-MDP1E9PL57 170 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF670-ZNF695F2Z2N8 137 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 PTGESO14684 152 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 F2P00734 622 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 ITGB3P05106 788 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 IL6P05231 212 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 TFPTP0C1Z6 253 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 PCNAP12004 261 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 EPORP19235 508 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 CPN2P22792 545 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 PTX3P26022 381 aaPredicted RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 PBX3P40426 434 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 CTSKP43235 329 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 SRSF11Q05519 484 aaKnown RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 RAPSNQ13702 412 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 USP10Q14694 798 aaKnown RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 ZXDCQ2QGD7 858 aaPredicted RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 GTDC1Q4AE62 458 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 MFSD4BQ5TF39 518 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 CCDC81Q6ZN84 652 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 OSTM1Q86WC4 334 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 IFNL1Q8IU54 200 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 SLC22A15Q8IZD6 547 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 PYROXD2Q8N2H3 581 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF786Q8N393 782 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 USP13Q92995 863 aaPredicted RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF560Q96MR9 790 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 SLC6A18Q96N87 628 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 DCUN1D5Q9BTE7 237 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 CCDC177Q9NQR7 707 aaPredicted RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 NUP50Q9UKX7 468 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 WDR81Q562E7 1941 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 PRR23AA6NEV1 266 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 PPP6CO00743 305 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 GAPDHSO14556 408 aaPredicted RBP5.21□□□□□ -1.57
SYNE1-220ENST00000471834 XYLBO75191 536 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 SLC25A27O95847 323 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 GSNP06396 782 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 NPR3P17342 541 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 AKT1P31749 480 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 PRMT2P55345 433 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 CXCL9Q07325 125 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 GTF2H3Q13889 308 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 CYP4Z2PQ8N1L4 340 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 NKAPQ8N5F7 415 aaKnown RBP5.21□□□□□ -1.57
SYNE1-220ENST00000471834 C3orf58Q8NDZ4 430 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 KBTBD8Q8NFY9 601 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 OR4K2Q8NGD2 314 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 NSMCE2Q96MF7 247 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 SYT17Q9BSW7 474 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 DNTTIP1Q9H147 329 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 GHITMQ9H3K2 345 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 PKP3Q9Y446 797 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 THSD7BQ9C0I4 1608 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 ARPC4-TTLL3A0A0A6YYG9 625 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 FZD9O00144 591 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 ARHGEF9O43307 516 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 SC5DO75845 299 aa5.21□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms