RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 MTHFSDQ2M296 383 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 FAM83EQ2M2I3 478 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 KRT24Q2M2I5 525 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 KLHL40Q2TBA0 621 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 ZNF829Q3KNS6 432 aaPredicted RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 FAM98BQ52LJ0 330 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 TAF1BQ53T94 588 aaPredicted RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 CBWD5Q5RIA9 395 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 GCNT6Q5T4J0 391 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 PIP5KL1Q5T9C9 394 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 PTRHD1Q6GMV3 140 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 THOC7Q6I9Y2 204 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 TWF2Q6IBS0 349 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 KIAA0930Q6ICG6 404 aaPredicted RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 WBP2NLQ6ICG8 309 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 OR6B2Q6IFH4 312 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 SULT1C3Q6IMI6 304 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 HMBOX1Q6NT76 420 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 CDC73Q6P1J9 531 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 CLEC9AQ6UXN8 241 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 TPGS1Q6ZTW0 290 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 NANOGNBQ7Z5D8 188 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 ZNF410Q86VK4 478 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 LRRC6Q86X45 466 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 TICAM1Q8IUC6 712 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 RASGRP3Q8IV61 690 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 ARHGAP12Q8IWW6 846 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 YAF2Q8IY57 180 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 PM20D2Q8IYS1 436 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 LRRC34Q8IZ02 419 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 MMP21Q8N119 569 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 BATF2Q8N1L9 274 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 PNPLA1Q8N8W4 532 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 RASGEF1AQ8N9B8 481 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 CCNYQ8ND76 341 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 SPATA4Q8NEY3 305 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 PAQR8Q8TEZ7 354 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 CCDC12Q8WUD4 166 aaPredicted RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 RHBDF1Q96CC6 855 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 NSMCE2Q96MF7 247 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 ZNF560Q96MR9 790 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 TRNT1Q96Q11 434 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 HIST1H2AAQ96QV6 131 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 PAFAH2Q99487 392 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 NUAK2Q9H093 628 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 RAB17Q9H0T7 212 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 RAD21L1Q9H4I0 556 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 CLK4Q9HAZ1 481 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 MRM3Q9HC36 420 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 PCDH9Q9HC56 1237 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 TRPC7Q9HCX4 862 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 DDX28Q9NUL7 540 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 ETNK2Q9NVF9 386 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 HYPKQ9NX55 129 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 GAR1Q9NY12 217 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 IL37Q9NZH6 218 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 HCN3Q9P1Z3 774 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 TRIM10Q9UDY6 481 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 FBXL17Q9UF56 701 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 CDH22Q9UJ99 828 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 NENFQ9UMX5 172 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 PROCRQ9UNN8 238 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 ACEP12821 1306 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 SMARCA2P51531 1590 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 NPC1L1Q9UHC9 1359 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 LOC102723996A0A087X1L8 192 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 GOLGA6L4A6NEF3 574 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 OR2W5A6NFC9 320 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 ARHGAP42A6NI28 874 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 FAM90A7PA6NKC0 464 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 FAM90A22PA8MWA6 464 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 FAM90A12PA8MX19 464 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 FAM90A23PA8MXZ1 464 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 F8W810 466 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 HIP1O00291 1037 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 SYN3O14994 580 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 LDLRAD4O15165 306 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 CLIC2O15247 247 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 AKR7A2O43488 359 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 CYTH3O43739 400 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 TBX19O60806 448 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 TAF5LO75529 589 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 TOM1L1O75674 476 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 CDK14O94921 469 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 CAVIN2O95810 425 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 TGM6O95932 706 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 IL1BP01584 269 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 HLA-DRAP01903 254 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 SERPING1P05155 500 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 ACAA1P09110 424 aaPredicted RBP4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 IQCF3P0C7M6 154 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 C8orf89P0DMQ9 161 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 UMPSP11172 480 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 CD19P15391 556 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 VCLP18206 1134 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 ADRA2CP18825 462 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 ITIH1P19827 911 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 PRKCHP24723 683 aa4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 HOXA13P31271 388 aaPredicted RBP4.7□□□□□ -1.66
CCDC88A-210ENST00000468534 SLC5A2P31639 672 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms