RNA–Protein interactions for RNA: ENST00000467663.5

CTNS-205, Transcript of cystinosin, lysosomal cystine transporter, human

TSL 3

Gene CTNS, Length 590 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNS-205	ENST00000467663	GPR39	O43194	453 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	SNX2	O60749	519 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	PRAMEF10	O60809	474 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	TRIM13	O60858	407 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	TPBGL	P0DKB5	382 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	THRA	P10827	490 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	MYL2	P10916	166 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	XRCC1	P18887	633 aa	Predicted RBP	11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	ATP5F1	P24539	256 aa	Predicted RBP	11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	AOAH	P28039	575 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	CSF2RB	P32927	897 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	EPHA4	P54764	986 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	DNAJB13	P59910	316 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	CBX1	P83916	185 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	NFKB2	Q00653	900 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	RPA4	Q13156	261 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	SP140	Q13342	867 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	GBX1	Q14549	363 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	KHDC1	Q4VXA5	237 aa	Known RBP	11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	ARHGAP40	Q5TG30	622 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	METTL2B	Q6P1Q9	378 aa	Known RBP	11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	TTC23L	Q6PF05	361 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	INO80C	Q6PI98	192 aa	Predicted RBP	11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	WDR74	Q6RFH5	385 aa	Predicted RBP	11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	ZYG11A	Q6WRX3	759 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	ISCA2	Q86U28	154 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	SLC9B2	Q86UD5	537 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	LRRTM4	Q86VH4	590 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	ZNF547	Q8IVP9	402 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	PLD6	Q8N2A8	252 aa	Known RBP	11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	CLDN19	Q8N6F1	224 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	AVL9	Q8NBF6	648 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	OR10G6	Q8NH81	332 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	MGARP	Q8TDB4	240 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	USP7	Q93009	1102 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	CHMP6	Q96FZ7	201 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	TIMM29	Q9BSF4	260 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	EPN3	Q9H201	632 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	STN1	Q9H668	368 aa	Known RBP	11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	MANSC1	Q9H8J5	431 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	PRDM8	Q9NQV8	689 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	KLC4	Q9NSK0	619 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	SLC23A2	Q9UGH3	650 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	EMCN	Q9ULC0	261 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	PRSS21	Q9Y6M0	314 aa		11.73	□□□□□ -0.53
CTNS-205	ENST00000467663	C9orf172	C9J069	976 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	AGRP	O00253	132 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	DUX1	O43812	170 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	KERA	O60938	352 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	SMIM24	O75264	130 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	MTX2	O75431	263 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	SLCO2B1	O94956	709 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	C8G	P07360	202 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	ENO2	P09104	434 aa	Predicted RBP	11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	LIPC	P11150	499 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	FGF3	P11487	239 aa	Predicted RBP	11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	CCL4	P13236	92 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	VCL	P18206	1134 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	TFEB	P19484	476 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	CD82	P27701	267 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	ALDH3A1	P30838	453 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	CA5A	P35218	305 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	MAPK10	P53779	464 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	GYS2	P54840	703 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	UBE2I	P63279	158 aa	Known RBP	11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	IRF9	Q00978	393 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	RHD	Q02161	417 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	LIPM	Q5VYY2	423 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	TMEM220	Q6QAJ8	160 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	CRTC3	Q6UUV7	619 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	PCSK4	Q6UW60	755 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	TMEM207	Q6UWW9	146 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	ABRAXAS1	Q6UWZ7	409 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	C11orf96	Q7Z7L8	435 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	ZNF761	Q86XN6	746 aa	Predicted RBP	11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	RASGEF1A	Q8N9B8	481 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	SIDT2	Q8NBJ9	832 aa	Known RBP	11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	AGBL5	Q8NDL9	886 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	RCBTB1	Q8NDN9	531 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	ANKRD49	Q8WVL7	239 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	ZNF75CP	Q92670	426 aa	Predicted RBP	11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	LINGO1	Q96FE5	620 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	AHCYL2	Q96HN2	611 aa	Known RBP	11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	CCNL2	Q96S94	520 aa	Predicted RBP	11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	TRIM54	Q9BYV2	358 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	UCK1	Q9HA47	277 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	OXSM	Q9NWU1	459 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	FOXJ2	Q9P0K8	574 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	TMEM9	Q9P0T7	183 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	XPR1	Q9UBH6	696 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	CPNE7	Q9UBL6	633 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	PCDHGA3	Q9Y5H0	932 aa		11.72	□□□□□ -0.53
CTNS-205	ENST00000467663	ANKRD12	Q6UB98	2062 aa		11.71	□□□□□ -0.53
CTNS-205	ENST00000467663	MGAT4D	A6NG13	374 aa		11.71	□□□□□ -0.53
CTNS-205	ENST00000467663	LILRA5	A6NI73	299 aa		11.71	□□□□□ -0.53
CTNS-205	ENST00000467663	TMEM114	B3SHH9	223 aa		11.71	□□□□□ -0.53
CTNS-205	ENST00000467663	ERVH48-1	M5A8F1	160 aa		11.71	□□□□□ -0.53
CTNS-205	ENST00000467663	EFS	O43281	561 aa		11.71	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms