RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 A0A1W2PPM1 405 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 DAPL1A0PJW8 107 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 NDUFS4O43181 175 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 PIAS1O75925 651 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 OR4F21O95013 312 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 KAT7O95251 611 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 AGR2O95994 175 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 ESR1P03372 595 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 C2P06681 752 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 RPL5P46777 297 aaKnown RBP8.53□□□□□ -1.04
HPS4-209ENST00000466781 ZNF41P51814 821 aaPredicted RBP8.53□□□□□ -1.04
HPS4-209ENST00000466781 PLET1Q6UQ28 207 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 GHDCQ8N2G8 530 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 CELF5Q8N6W0 485 aaKnown RBP8.53□□□□□ -1.04
HPS4-209ENST00000466781 PDPRQ8NCN5 879 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 AUTS2Q8WXX7 1259 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 HNRNPABQ99729 332 aaKnown RBP8.53□□□□□ -1.04
HPS4-209ENST00000466781 ARHGAP39Q9C0H5 1083 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 MARCH7Q9H992 704 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 TAS2R7Q9NYW3 318 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 EDDM13A0A1B0GTR0 161 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 ZNF878C9JN71 531 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 hCG_2039718K7EN88 272 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 FSCN2O14926 492 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 CST3P01034 146 aaPredicted RBP8.53□□□□□ -1.04
HPS4-209ENST00000466781 L1CAMP32004 1257 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 CWF19L1Q69YN2 538 aaKnown RBP8.53□□□□□ -1.04
HPS4-209ENST00000466781 UTS2BQ765I0 119 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 NUDT13Q86X67 352 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 TMEM126BQ8IUX1 230 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 MMAAQ8IVH4 418 aaKnown RBP8.53□□□□□ -1.04
HPS4-209ENST00000466781 SDR16C5Q8N3Y7 309 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 SNED1Q8TER0 1413 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 KLHL6Q8WZ60 621 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 PSMG2Q969U7 264 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 BTBD1Q9H0C5 482 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 C12orf4Q9NQ89 552 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 THUMPD1Q9NXG2 353 aaKnown RBP8.53□□□□□ -1.04
HPS4-209ENST00000466781 SLC17A7Q9P2U7 560 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 NHSQ6T4R5 1651 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 ITGA10O75578 1167 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 SYNGR4O95473 234 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 CHRNA1P02708 482 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 CSTBP04080 98 aaKnown RBP8.53□□□□□ -1.04
HPS4-209ENST00000466781 FOSL2P15408 326 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 CDKN1CP49918 316 aaPredicted RBP8.53□□□□□ -1.04
HPS4-209ENST00000466781 OCLNQ16625 522 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 KLHL22Q53GT1 634 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 SPIN3Q5JUX0 258 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 IDNKQ5T6J7 187 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 C12orf40Q86WS4 652 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 FAM46DQ8NEK8 389 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 ZNF384Q8TF68 577 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 RGMAQ96B86 450 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 MIPEPQ99797 713 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 NKX2-4Q9H2Z4 354 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 WDR55Q9H6Y2 383 aaPredicted RBP8.53□□□□□ -1.04
HPS4-209ENST00000466781 IFT52Q9Y366 437 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 FADS3Q9Y5Q0 445 aa8.53□□□□□ -1.04
HPS4-209ENST00000466781 SLC33A1O00400 549 aaPredicted RBP8.52□□□□□ -1.04
HPS4-209ENST00000466781 KHNYNO15037 678 aaKnown RBP8.52□□□□□ -1.04
HPS4-209ENST00000466781 PCDH7O60245 1069 aa8.52□□□□□ -1.04
HPS4-209ENST00000466781 SNAI1O95863 264 aaPredicted RBP8.52□□□□□ -1.04
HPS4-209ENST00000466781 GNAZP19086 355 aa8.52□□□□□ -1.04
HPS4-209ENST00000466781 GRK5P34947 590 aa8.52□□□□□ -1.04
HPS4-209ENST00000466781 BTN3A2P78410 334 aa8.52□□□□□ -1.04
HPS4-209ENST00000466781 EIF2S3LQ2VIR3 472 aaKnown RBP8.52□□□□□ -1.04
HPS4-209ENST00000466781 ZNF776Q68DI1 518 aaPredicted RBP8.52□□□□□ -1.04
HPS4-209ENST00000466781 USP30Q70CQ3 517 aa8.52□□□□□ -1.04
HPS4-209ENST00000466781 AHSA2Q719I0 299 aa8.52□□□□□ -1.04
HPS4-209ENST00000466781 ANKRD46Q86W74 232 aa8.52□□□□□ -1.04
HPS4-209ENST00000466781 RAB43Q86YS6 212 aa8.52□□□□□ -1.04
HPS4-209ENST00000466781 DEFB119Q8N690 84 aa8.52□□□□□ -1.04
HPS4-209ENST00000466781 ALG2Q9H553 416 aa8.52□□□□□ -1.04
HPS4-209ENST00000466781 FAM124BQ9H5Z6 455 aaPredicted RBP8.52□□□□□ -1.04
HPS4-209ENST00000466781 RC3H2Q9HBD1 1191 aaKnown RBP8.52□□□□□ -1.04
HPS4-209ENST00000466781 ADAP2Q9NPF8 381 aa8.52□□□□□ -1.04
HPS4-209ENST00000466781 LYARQ9NX58 379 aaKnown RBP8.52□□□□□ -1.04
HPS4-209ENST00000466781 PLLPQ9Y342 182 aa8.52□□□□□ -1.04
HPS4-209ENST00000466781 METTL21EPA6NDL7 271 aa8.52□□□□□ -1.05
HPS4-209ENST00000466781 C5orf51A6NDU8 294 aa8.52□□□□□ -1.05
HPS4-209ENST00000466781 C4BPAP04003 597 aaKnown RBP8.52□□□□□ -1.05
HPS4-209ENST00000466781 HEXBP07686 556 aa8.52□□□□□ -1.05
HPS4-209ENST00000466781 NELFEP18615 380 aaKnown RBP8.52□□□□□ -1.05
HPS4-209ENST00000466781 CLCN4P51793 760 aa8.52□□□□□ -1.05
HPS4-209ENST00000466781 ARFRP1Q13795 201 aa8.52□□□□□ -1.05
HPS4-209ENST00000466781 SCARB2Q14108 478 aa8.52□□□□□ -1.05
HPS4-209ENST00000466781 DNAJB7Q7Z6W7 309 aaPredicted RBP8.52□□□□□ -1.05
HPS4-209ENST00000466781 CPNE9Q8IYJ1 553 aa8.52□□□□□ -1.05
HPS4-209ENST00000466781 OXR1Q8N573 874 aa8.52□□□□□ -1.05
HPS4-209ENST00000466781 SLC44A1Q8WWI5 657 aa8.52□□□□□ -1.05
HPS4-209ENST00000466781 DGCR14Q96DF8 476 aaKnown RBP8.52□□□□□ -1.05
HPS4-209ENST00000466781 ASPNQ9BXN1 380 aa8.52□□□□□ -1.05
HPS4-209ENST00000466781 CENPMQ9NSP4 180 aa8.52□□□□□ -1.05
HPS4-209ENST00000466781 TDP1Q9NUW8 608 aa8.52□□□□□ -1.05
HPS4-209ENST00000466781 C1orf109Q9NX04 203 aa8.52□□□□□ -1.05
HPS4-209ENST00000466781 NAV1Q8NEY1 1877 aa8.52□□□□□ -1.05
HPS4-209ENST00000466781 TEX13CA0A0J9YWL9 993 aa8.52□□□□□ -1.05
HPS4-209ENST00000466781 PRR5-ARHGAP8B1AHC4 643 aa8.52□□□□□ -1.05
HPS4-209ENST00000466781 MID1O15344 667 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms