RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 LRATO95237 230 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 ITGAMP11215 1152 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 PRKAR2AP13861 404 aaKnown RBP9.61□□□□□ -0.87
SS18-203ENST00000415083 GNPDA1P46926 289 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 RPS3AP61247 264 aaKnown RBP9.61□□□□□ -0.87
SS18-203ENST00000415083 VBP1P61758 197 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 LSM3P62310 102 aaKnown RBP9.61□□□□□ -0.87
SS18-203ENST00000415083 ZNF177Q13360 481 aaPredicted RBP9.61□□□□□ -0.87
SS18-203ENST00000415083 INAVAQ3KP66 663 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 ATG9BQ674R7 924 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 CAPN13Q6MZZ7 669 aaPredicted RBP9.61□□□□□ -0.87
SS18-203ENST00000415083 Q6ZPB1 254 aaPredicted RBP9.61□□□□□ -0.87
SS18-203ENST00000415083 RNF168Q8IYW5 571 aaPredicted RBP9.61□□□□□ -0.87
SS18-203ENST00000415083 SVOPLQ8N434 492 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 CARNMT1Q8N4J0 409 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 TERB1Q8NA31 727 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 DDHD1Q8NEL9 900 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 UPF1Q92900 1129 aaKnown RBP eCLIP9.61□□□□□ -0.874e-7■■□□□ 11.8
SS18-203ENST00000415083 FAM162AQ96A26 154 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 PYURFQ96I23 114 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 DPH2Q9BQC3 489 aaPredicted RBP9.61□□□□□ -0.87
SS18-203ENST00000415083 DPY30Q9C005 99 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 RAD21L1Q9H4I0 556 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 TMEM161AQ9NX61 479 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 RNF186Q9NXI6 227 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 TRPS1Q9UHF7 1281 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 B3GNT3Q9Y2A9 372 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 TNPO3Q9Y5L0 923 aaKnown RBP9.61□□□□□ -0.87
SS18-203ENST00000415083 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.6□□□□□ -0.87
SS18-203ENST00000415083 RAD51BO15315 384 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 CBFA2T3O75081 653 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 SCELO95171 688 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 IL6P05231 212 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 JUNDP17535 347 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 TGM1P22735 817 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 MAGEA8P43361 318 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 SLC11A2P49281 568 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 NCS1P62166 190 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 SIM2Q14190 667 aaPredicted RBP9.6□□□□□ -0.87
SS18-203ENST00000415083 CPSF6Q16630 551 aaKnown RBP eCLIP9.6□□□□□ -0.87
SS18-203ENST00000415083 TTC23Q5W5X9 447 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 GRAMD4Q6IC98 578 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 SHQ1Q6PI26 577 aaKnown RBP9.6□□□□□ -0.87
SS18-203ENST00000415083 SNX20Q7Z614 316 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 DSG4Q86SJ6 1040 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 DYNC2LI1Q8TCX1 351 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 NODALQ96S42 347 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 CLSTN3Q9BQT9 956 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 CHST8Q9H2A9 424 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 MAGIXQ9H6Y5 334 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 ASB8Q9H765 288 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 THG1LQ9NWX6 298 aaKnown RBP9.6□□□□□ -0.87
SS18-203ENST00000415083 C1orf109Q9NX04 203 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 PCDH10Q9P2E7 1040 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 BAG5Q9UL15 447 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 PAIP2BQ9ULR5 123 aaKnown RBP9.6□□□□□ -0.87
SS18-203ENST00000415083 MANSC4A6NHS7 340 aaPredicted RBP9.6□□□□□ -0.87
SS18-203ENST00000415083 TBL1XO60907 577 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 NDUFS2O75306 463 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 ULK1O75385 1050 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 KCNK5O95279 499 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 TRBC1P01850 177 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 EBLN1P0CF75 366 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 IL1RNP18510 177 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 RAD23AP54725 363 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 CLDN8P56748 225 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 DGKKQ5KSL6 1271 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 ARMC12Q5T9G4 340 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 SLC8B1Q6J4K2 584 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 MACC1Q6ZN28 852 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 SAPCD2Q86UD0 394 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 ZZZ3Q8IYH5 903 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 CADM3Q8N126 398 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 ZBTB2Q8N680 514 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 MYO19Q96H55 970 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 REXO5Q96IC2 774 aaKnown RBP9.6□□□□□ -0.87
SS18-203ENST00000415083 ZNF641Q96N77 438 aaPredicted RBP9.6□□□□□ -0.87
SS18-203ENST00000415083 TSSK3Q96PN8 268 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 MROQ9BYG7 248 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 GPR63Q9BZJ6 419 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 KCNH6Q9H252 994 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 KIAA1522Q9P206 1035 aaPredicted RBP9.6□□□□□ -0.87
SS18-203ENST00000415083 OPTCQ9UBM4 332 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 SLCO3A1Q9UIG8 710 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 SLC6A14Q9UN76 642 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 VPS9D1Q9Y2B5 631 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 PCDHB1Q9Y5F3 818 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 PLXND1Q9Y4D7 1925 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 A0A096LPI6 279 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 TRIM43BA6NCK2 446 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 PRAMEF25A6NGN4 478 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 ZNF99A8MXY4 864 aaPredicted RBP9.6□□□□□ -0.87
SS18-203ENST00000415083 TTC34A8MYJ7 566 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 CFAP99D6REC4 459 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 BCKDKO14874 412 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 RGS14O43566 566 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 MT-ND2P03891 347 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 NUDT7P0C024 238 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 LHCGRP22888 699 aa9.6□□□□□ -0.87
SS18-203ENST00000415083 GRK5P34947 590 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms