RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 LIASO43766 372 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 HCAR3P49019 387 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 NIPAL4Q0D2K0 466 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 NTRK2Q16620 822 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 IQCF1Q8N6M8 205 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 LRTOMTQ8WZ04 291 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 COPS8Q99627 209 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 PCDHB1Q9Y5F3 818 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 CPS1P31327 1500 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 ADGRL2O95490 1459 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 TET3O43151 1660 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 RPL35P42766 123 aaKnown RBP13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 PSEN2P49810 448 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 PNLIPRP1P54315 467 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 DEFB106AQ8N104 65 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 NAXEQ8NCW5 288 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 MAPKAP1Q9BPZ7 522 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 NPLQ9BXD5 320 aaPredicted RBP13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 FBXW2Q9UKT8 454 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 RPP14O95059 124 aaKnown RBP13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 JUNP05412 331 aaKnown RBP13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 ASGR1P07306 291 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 ZNF143P52747 638 aaPredicted RBP13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 BTG3Q14201 252 aaPredicted RBP13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 TRAM1Q15629 374 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 UGT8Q16880 541 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 TMEM145Q8NBT3 493 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 ZNF670Q9BS34 389 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 ITPAQ9BY32 194 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 FAM205AQ6ZU69 1335 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 A0A0U1RQK1 487 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 E5RJQ4 531 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 GSTM3P21266 225 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 TMEM69Q5SWH9 247 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 MED27Q6P2C8 311 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 TSPAN33Q86UF1 283 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 LIX1Q8N485 282 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 ASCC1Q8N9N2 400 aaKnown RBP13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 HDAC10Q969S8 669 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 RTFDC1Q9BY42 306 aaPredicted RBP13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 FZD3Q9NPG1 666 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 ARMC1Q9NVT9 282 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 NUDT4Q9NZJ9 180 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 ZDHHC9Q9Y397 364 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 ZCCHC11Q5TAX3 1644 aaKnown RBP13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 SCDO00767 359 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 LYPLA1O75608 230 aaPredicted RBP13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 AHSA1O95433 338 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 TLE1Q04724 770 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 RAB35Q15286 201 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 CHST9Q7L1S5 443 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 GPR151Q8TDV0 419 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 EIF2B4Q9UI10 523 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 RPL13AP40429 203 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 FABP6P51161 128 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 CHIT1Q13231 466 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 MAMLD1Q13495 774 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 ADGRE1Q14246 886 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 IL23RQ5VWK5 629 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 PDZD9Q8IXQ8 264 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 KLHL6Q8WZ60 621 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 DUSP16Q9BY84 665 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 DNTTIP1Q9H147 329 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 RHOJQ9H4E5 214 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 ZNF609O15014 1411 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 RTP1P59025 263 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 GPR149Q86SP6 731 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 FBXO16Q8IX29 292 aaPredicted RBP13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 NSUN4Q96CB9 384 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 AP2A1O95782 977 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 ARL9Q6T311 187 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 CEP68Q76N32 757 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 GRHL3Q8TE85 626 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 KCNC2Q96PR1 638 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 EPYCQ99645 322 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 OSMRQ99650 979 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 TBL1XR1Q9BZK7 514 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 TCRBV9S1A1TA0A576 114 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 HTR1AP08908 422 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 CTBP1Q13363 440 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 CRTC1Q6UUV9 634 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 SAMD14Q8IZD0 417 aaPredicted RBP13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 LACRTQ9GZZ8 138 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 ACSS3Q9H6R3 686 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 EIF1AYO14602 144 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 STK16O75716 305 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 CDH1P12830 882 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 EIF1AXP47813 144 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 ABHD13Q7L211 337 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 CLNKQ7Z7G1 428 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 ZNF410Q86VK4 478 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 CERKQ8TCT0 537 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 LPGAT1Q92604 370 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 ARL5BQ96KC2 179 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 SLC35G5Q96KT7 338 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 OR2M4Q96R27 311 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 BARD1Q99728 777 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 AGO1Q9UL18 857 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 RNF4P78317 190 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 ZNF181Q2M3W8 571 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms