RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 SDR16C5Q8N3Y7 309 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 NKAPQ8N5F7 415 aaKnown RBP13.07□□□□□ -0.32
LIMS1-204ENST00000409441 MINDY1Q8N5J2 469 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 LILRA3Q8N6C8 439 aaPredicted RBP13.07□□□□□ -0.32
LIMS1-204ENST00000409441 SIDT2Q8NBJ9 832 aaKnown RBP13.07□□□□□ -0.32
LIMS1-204ENST00000409441 HM13Q8TCT9 377 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 ASZ1Q8WWH4 475 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 JADE3Q92613 823 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 MS4A3Q96HJ5 214 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 ERVK-6Q9BXR3 956 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 OSGEPL1Q9H4B0 414 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 PARD6AQ9NPB6 346 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 KLHL42Q9P2K6 505 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 TMCO1Q9UM00 188 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 PRPF19Q9UMS4 504 aaKnown RBP13.07□□□□□ -0.32
LIMS1-204ENST00000409441 DHRS7Q9Y394 339 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 LRRC42Q9Y546 428 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 WDR87Q6ZQQ6 2873 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 PRR19A6NJB7 356 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 LMO7DNF2Z398 122 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 LIN7AO14910 233 aaPredicted RBP13.06□□□□□ -0.32
LIMS1-204ENST00000409441 YKT6O15498 198 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 SNX2O60749 519 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 RPL10P27635 214 aaKnown RBP13.06□□□□□ -0.32
LIMS1-204ENST00000409441 VHLP40337 213 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 PTDSS1P48651 473 aaKnown RBP13.06□□□□□ -0.32
LIMS1-204ENST00000409441 C1orf146Q5VVC0 180 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 NXNQ6DKJ4 435 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 CHSY3Q70JA7 882 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 ASCL5Q7RTU5 278 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 GKN2Q86XP6 184 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 GATAD2AQ86YP4 633 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 SPNS2Q8IVW8 549 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 ZBTB2Q8N680 514 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 FAM46DQ8NEK8 389 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 SAP25Q8TEE9 199 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 KIAA1191Q96A73 305 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 PTERQ96BW5 349 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 SLC30A3Q99726 388 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 SHCBP1LQ9BZQ2 653 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 ZBTB26Q9HCK0 441 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 PRDM8Q9NQV8 689 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 ACSS2Q9NR19 701 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 TAAR2Q9P1P5 351 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 TBC1D29Q9UFV1 150 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 TRMT6Q9UJA5 497 aaKnown RBP13.06□□□□□ -0.32
LIMS1-204ENST00000409441 ACSL5Q9ULC5 683 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 DOLKQ9UPQ8 538 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 CSNK1G3Q9Y6M4 447 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 DMDP11532 3685 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 MYO15AQ9UKN7 3530 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 SLC5A10A0PJK1 596 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 KERAO60938 352 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 GPC4O75487 556 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 SLCO2B1O94956 709 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 ANXA6P08133 673 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 EPHA8P29322 1005 aaPredicted RBP13.06□□□□□ -0.32
LIMS1-204ENST00000409441 PDHA2P29803 388 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 PREPP48147 710 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 CCT8P50990 548 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 AP2B1P63010 937 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 PLOD1Q02809 727 aaPredicted RBP13.06□□□□□ -0.32
LIMS1-204ENST00000409441 RPA4Q13156 261 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 CYLC2Q14093 348 aaPredicted RBP13.06□□□□□ -0.32
LIMS1-204ENST00000409441 SYTL3Q4VX76 610 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 UNC50Q53HI1 259 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 PLEKHS1Q5SXH7 462 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 PAQR3Q6TCH7 311 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 XKR5Q6UX68 686 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 DEFB107AQ8IZN7 70 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 GIMAP7Q8NHV1 300 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 STAG3L4Q8TBR4 150 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 CD200R1Q8TD46 325 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 TMEM159Q96B96 161 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 PHF21BQ96EK2 531 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 CLPTM1LQ96KA5 538 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 CATSPER2Q96P56 530 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 ATOH8Q96SQ7 321 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 DPEP2Q9H4A9 486 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 RXFP3Q9NSD7 469 aa13.06□□□□□ -0.32
LIMS1-204ENST00000409441 ZFHX2Q9C0A1 2572 aaPredicted RBP13.05□□□□□ -0.32
LIMS1-204ENST00000409441 LOC100653049A0A140TA62 436 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 SYCE1LA8MT33 242 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 CDX4O14627 284 aaPredicted RBP13.05□□□□□ -0.32
LIMS1-204ENST00000409441 PCDHGA12O60330 932 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 KRT34O76011 436 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 SUPT7LO94864 414 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 EML2O95834 649 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 JUNP05412 331 aaKnown RBP13.05□□□□□ -0.32
LIMS1-204ENST00000409441 TBL3Q12788 808 aaKnown RBP13.05□□□□□ -0.32
LIMS1-204ENST00000409441 SQLEQ14534 574 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 MAPRE2Q15555 327 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 DEFB133Q30KQ1 61 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 TTLL9Q3SXZ7 439 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 PRR23CQ6ZRP0 262 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 KANSL1Q7Z3B3 1105 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 SNX32Q86XE0 403 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 VRK3Q8IV63 474 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 KYQ8NBH2 561 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 SERPINI1Q99574 410 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms