RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 AREL1O15033 823 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 KPNA5O15131 536 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 KERAO60938 352 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 PRAMEF1O95521 474 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 STC1P52823 247 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 IRF8Q02556 426 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 STARD3Q14849 445 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 TBRG1Q3YBR2 411 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 RFTN2Q52LD8 501 aaPredicted RBP11.68□□□□□ -0.54
HMGB1-206ENST00000405805 ANKRD26P1Q6NSI1 321 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 RGMBQ6NW40 437 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 MAMDC4Q6UXC1 1216 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 P2RY8Q86VZ1 359 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 C2orf73Q8N5S3 287 aaPredicted RBP11.68□□□□□ -0.54
HMGB1-206ENST00000405805 IMP4Q96G21 291 aaKnown RBP11.68□□□□□ -0.54
HMGB1-206ENST00000405805 MYRFLQ96LU7 910 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 YARS2Q9Y2Z4 477 aaKnown RBP11.68□□□□□ -0.54
HMGB1-206ENST00000405805 IFT52Q9Y366 437 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 TESMINQ9Y4I5 508 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 MTRF1O75570 445 aaKnown RBP11.68□□□□□ -0.54
HMGB1-206ENST00000405805 PDE9AO76083 593 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 ARHGEF15O94989 841 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 YES1P07947 543 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 ATP6V1E1P36543 226 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 OPRL1P41146 370 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 POLD2P49005 469 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 YBX1P67809 324 aaKnown RBP11.68□□□□□ -0.54
HMGB1-206ENST00000405805 DEFA5Q01523 94 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 CCDC58Q4VC31 144 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 IGFN1Q86VF2 1251 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 CACUL1Q86Y37 369 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 PIANPQ8IYJ0 282 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 FUNDC2Q9BWH2 189 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 CD320Q9NPF0 282 aa11.68□□□□□ -0.54
HMGB1-206ENST00000405805 SHROOM3Q8TF72 1996 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 FAM234BA2RU67 622 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 CENPBD1B2RD01 187 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 ABRQ12979 859 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 PCBP1Q15365 356 aaKnown RBP eCLIP11.67□□□□□ -0.54
HMGB1-206ENST00000405805 ANGPT1Q15389 498 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 SYTL3Q4VX76 610 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 IGSF11Q5DX21 431 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 PDE12Q6L8Q7 609 aaKnown RBP11.67□□□□□ -0.54
HMGB1-206ENST00000405805 CRTC1Q6UUV9 634 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 ADAMTSL2Q86TH1 951 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 STX12Q86Y82 276 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 STON2Q8WXE9 905 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 TFB2MQ9H5Q4 396 aaKnown RBP11.67□□□□□ -0.54
HMGB1-206ENST00000405805 RAPGEFL1Q9UHV5 662 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 IKZF3Q9UKT9 509 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 TBL1XO60907 577 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 DUSP11O75319 330 aaKnown RBP11.67□□□□□ -0.54
HMGB1-206ENST00000405805 RASAL1O95294 804 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 TP53P04637 393 aaPredicted RBP11.67□□□□□ -0.54
HMGB1-206ENST00000405805 SHMT2P34897 504 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 NCS1P62166 190 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 SCAPQ12770 1279 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 TRIM71Q2Q1W2 868 aaKnown RBP11.67□□□□□ -0.54
HMGB1-206ENST00000405805 PRSS55Q6UWB4 352 aaPredicted RBP11.67□□□□□ -0.54
HMGB1-206ENST00000405805 DEFB128Q7Z7B8 93 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 TICAM1Q8IUC6 712 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 TMEM199Q8N511 208 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 VANGL1Q8TAA9 524 aaPredicted RBP11.67□□□□□ -0.54
HMGB1-206ENST00000405805 IRGQQ8WZA9 623 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 C11orf84Q9BUA3 381 aaPredicted RBP11.67□□□□□ -0.54
HMGB1-206ENST00000405805 SEZ6LQ9BYH1 1024 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 KLHL31Q9H511 634 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 DUS2Q9NX74 493 aaKnown RBP11.67□□□□□ -0.54
HMGB1-206ENST00000405805 TRPM5Q9NZQ8 1165 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 LOC100130705A0A1B0GUX0 176 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 SMIM30A4D0T7 59 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 A8MUA0 341 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 FFAR2O15552 330 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 CSF2P04141 144 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 ZNF865P0CJ78 1059 aaPredicted RBP11.67□□□□□ -0.54
HMGB1-206ENST00000405805 ACSM2AQ08AH3 577 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 ABRAXAS2Q15018 415 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 PHKG1Q16816 387 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 VARS2Q5ST30 1063 aaKnown RBP11.67□□□□□ -0.54
HMGB1-206ENST00000405805 ACSM2BQ68CK6 577 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 PM20D1Q6GTS8 502 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 ZNF773Q6PK81 442 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 ADCK2Q7Z695 626 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 SERPINA9Q86WD7 417 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 TMEM126BQ8IUX1 230 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 ZNF366Q8N895 744 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 SLC22A8Q8TCC7 542 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 KIAA1191Q96A73 305 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 TMEM125Q96AQ2 219 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 TSGA13Q96PP4 275 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 RBM4BQ9BQ04 359 aaKnown RBP11.67□□□□□ -0.54
HMGB1-206ENST00000405805 RBM4Q9BWF3 364 aaKnown RBP11.67□□□□□ -0.54
HMGB1-206ENST00000405805 ERVK-18Q9QC07 812 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 PCDHGA8Q9Y5G5 932 aa11.67□□□□□ -0.54
HMGB1-206ENST00000405805 TNPO3Q9Y5L0 923 aaKnown RBP11.67□□□□□ -0.54
HMGB1-206ENST00000405805 URB1O60287 2271 aaKnown RBP11.67□□□□□ -0.54
HMGB1-206ENST00000405805 A0A1B0GW55 424 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 LOC730098B7Z3J9 87 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 H3BN98 237 aa11.66□□□□□ -0.54
HMGB1-206ENST00000405805 GABRDO14764 452 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms