RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CD9P21926 228 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 GCKP35557 465 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 PRLHRP49683 370 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 DUSP3P51452 185 aaPredicted RBP9.94□□□□□ -0.82
VPS53-202ENST00000389040 INHBCP55103 352 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 SESN3P58005 492 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 RPA4Q13156 261 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 CYLC2Q14093 348 aaPredicted RBP9.94□□□□□ -0.82
VPS53-202ENST00000389040 PGM2L1Q6PCE3 622 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 OGFOD3Q6PK18 319 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 DOK6Q6PKX4 331 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 TMEM220Q6QAJ8 160 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 GLRX5Q86SX6 157 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 PIP4P1Q86T03 277 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 TRIM74Q86UV6 250 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 MYLK4Q86YV6 388 aaPredicted RBP9.94□□□□□ -0.82
VPS53-202ENST00000389040 TRAPPC5Q8IUR0 188 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 STAG3L4Q8TBR4 150 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 MARK4Q96L34 752 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 CCM2Q9BSQ5 444 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 BOCQ9BWV1 1114 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 TMEM168Q9H0V1 697 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 MRPL40Q9NQ50 206 aaKnown RBP9.94□□□□□ -0.82
VPS53-202ENST00000389040 FSCN3Q9NQT6 498 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 MRGBPQ9NV56 204 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 PNMA8BQ9ULN7 279 aaPredicted RBP9.94□□□□□ -0.82
VPS53-202ENST00000389040 GON4LQ3T8J9 2241 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 CCDC189A1A4V9 331 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 AIM2O14862 343 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 YY2O15391 372 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 ZW10O43264 779 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 POP7O75817 140 aaKnown RBP9.93□□□□□ -0.82
VPS53-202ENST00000389040 CEACAM1P13688 526 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 GFAPP14136 432 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 NUDT2P50583 147 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 B4GALNT1Q00973 533 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 CTBSQ01459 385 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 TBL3Q12788 808 aaKnown RBP9.93□□□□□ -0.82
VPS53-202ENST00000389040 BNIP3Q12983 259 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 ILKQ13418 452 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 PFKFB4Q16877 469 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 ZNF542PQ5EBM4 170 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 CTSL3PQ5NE16 218 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 PRAMEF14Q5SWL7 426 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 C6orf132Q5T0Z8 1188 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 TLDC1Q6P9B6 456 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 CHSY3Q70JA7 882 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 TAF8Q7Z7C8 310 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 ZNF547Q8IVP9 402 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 NAXDQ8IW45 347 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 NKAPQ8N5F7 415 aaKnown RBP9.93□□□□□ -0.82
VPS53-202ENST00000389040 KYQ8NBH2 561 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 TRMT6Q9UJA5 497 aaKnown RBP9.93□□□□□ -0.82
VPS53-202ENST00000389040 GNPTGQ9UJJ9 305 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 RNF112Q9ULX5 631 aa9.93□□□□□ -0.82
VPS53-202ENST00000389040 PLXNA2O75051 1894 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 KIR2DS5A0A0G2JLQ3 304 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 A0A0G2JNG1 304 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 PRR19A6NJB7 356 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 SYCE1LA8MT33 242 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 SUPT3HB4E1H0 165 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 KIR2DS3K7RE56 304 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 LIN7AO14910 233 aaPredicted RBP9.92□□□□□ -0.82
VPS53-202ENST00000389040 GDF9O60383 454 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 CBFA2T3O75081 653 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 NIPSNAP2O75323 286 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 SUPT3HO75486 399 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 PDE5AO76074 875 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 SIX3O95343 332 aaPredicted RBP9.92□□□□□ -0.82
VPS53-202ENST00000389040 RPSAP08865 295 aaKnown RBP9.92□□□□□ -0.82
VPS53-202ENST00000389040 PNLIPP16233 465 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 TSPAN8P19075 237 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 IDSP22304 550 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 VHLP40337 213 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 KIR2DS5Q14953 304 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 TSNQ15631 228 aaKnown RBP9.92□□□□□ -0.82
VPS53-202ENST00000389040 METRNLQ641Q3 311 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 CLEC6AQ6EIG7 209 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 C16orf89Q6UX73 402 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 CHST15Q7LFX5 561 aaPredicted RBP9.92□□□□□ -0.82
VPS53-202ENST00000389040 C11orf96Q7Z7L8 435 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 FBXW8Q8N3Y1 598 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 ARL10Q8N8L6 244 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 SIDT2Q8NBJ9 832 aaKnown RBP9.92□□□□□ -0.82
VPS53-202ENST00000389040 FAM46DQ8NEK8 389 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 RHBDD1Q8TEB9 315 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 ZFPM2Q8WW38 1151 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 KCNJ9Q92806 393 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 RSRC1Q96IZ7 334 aaKnown RBP9.92□□□□□ -0.82
VPS53-202ENST00000389040 SLC30A3Q99726 388 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 P2RY12Q9H244 342 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 DPEP2Q9H4A9 486 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 LATS2Q9NRM7 1088 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 DLL3Q9NYJ7 618 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 GALPQ9UBC7 116 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 IKZF3Q9UKT9 509 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 ANGPTL2Q9UKU9 493 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 LRRC42Q9Y546 428 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 SDK1Q7Z5N4 2213 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 EP300Q09472 2414 aaPredicted RBP9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms