RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 C6P13671 934 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 FUT4P22083 530 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 EEF1DP29692 281 aaKnown RBP13.92□□□□□ -0.18
HMGA1-203ENST00000374116 HMOX2P30519 316 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 PTSQ03393 145 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 CLCQ05315 142 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 LCP2Q13094 533 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 ZRANB3Q5FWF4 1079 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 CTSL3PQ5NE16 218 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 PMS2CLQ68D20 193 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 ANKS6Q68DC2 871 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 KIAA0895LQ68EN5 471 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 REP15Q6BDI9 236 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 LIPIQ6XZB0 460 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 USP45Q70EL2 814 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 LPCAT2Q7L5N7 544 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 HSD11B1LQ7Z5J1 315 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 TSPAN14Q8NG11 270 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 TWIST2Q8WVJ9 160 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 RAB7BQ96AH8 199 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 C3orf30Q96M34 536 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 LRGUKQ96M69 825 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 CGREF1Q99674 301 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 C1QTNF3Q9BXJ4 246 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 P2RY12Q9H244 342 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 SMOC1Q9H4F8 434 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 AKTIPQ9H8T0 292 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 CCDC167Q9P0B6 97 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 TRMT6Q9UJA5 497 aaKnown RBP13.92□□□□□ -0.18
HMGA1-203ENST00000374116 FNDC3AQ9Y2H6 1198 aaKnown RBP13.92□□□□□ -0.18
HMGA1-203ENST00000374116 PKP3Q9Y446 797 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 METTL12A8MUP2 240 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 H0Y8X5 98 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 RAD51BO15315 384 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 OR1I1O60431 355 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 TSPAN12O95859 305 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 ESR1P03372 595 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 VIPR1P32241 457 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 ETV3P41162 512 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 ENTPD1P49961 510 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 BCAP31P51572 246 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 IL2P60568 153 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 MS4A2Q01362 244 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 CACNG1Q06432 222 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 ELP6Q0PNE2 266 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 ACOX1Q15067 660 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 TSNQ15631 228 aaKnown RBP13.92□□□□□ -0.18
HMGA1-203ENST00000374116 ZNF284Q2VY69 593 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 ZNF829Q3KNS6 432 aaPredicted RBP13.92□□□□□ -0.18
HMGA1-203ENST00000374116 UGT3A1Q6NUS8 523 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 SLC36A4Q6YBV0 504 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 DPPA4Q7L190 304 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 HORMAD1Q86X24 394 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 KCNJ9Q92806 393 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 FUBP1Q96AE4 644 aaKnown RBP13.92□□□□□ -0.18
HMGA1-203ENST00000374116 MCCC1Q96RQ3 725 aaPredicted RBP13.92□□□□□ -0.18
HMGA1-203ENST00000374116 LYSMD1Q96S90 227 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 ADA2Q9NZK5 511 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 GALPQ9UBC7 116 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 SUCOQ9UBS9 1254 aaKnown RBP13.92□□□□□ -0.18
HMGA1-203ENST00000374116 APPL1Q9UKG1 709 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 IKZF3Q9UKT9 509 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 PPIL1Q9Y3C6 166 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 PRSS51A0A1B0GVH4 220 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 LRRC14BA6NHZ5 514 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 BBIP1A8MTZ0 92 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 CDC7O00311 574 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 ACOT8O14734 319 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 TSPAN6O43657 245 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 LZTS3O60299 673 aaPredicted RBP13.91□□□□□ -0.18
HMGA1-203ENST00000374116 NRP2O60462 931 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 RPS17P08708 135 aaKnown RBP13.91□□□□□ -0.18
HMGA1-203ENST00000374116 GPX3P22352 226 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 PTPN5P54829 565 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 CLDN2P57739 230 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 TMEM52BQ4KMG9 183 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 NIPAL1Q6NVV3 410 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 ZC3H14Q6PJT7 736 aaKnown RBP13.91□□□□□ -0.18
HMGA1-203ENST00000374116 DCDC5Q6ZRR9 648 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 EFL1Q7Z2Z2 1120 aaKnown RBP13.91□□□□□ -0.18
HMGA1-203ENST00000374116 BHLHE22Q8NFJ8 381 aaPredicted RBP13.91□□□□□ -0.18
HMGA1-203ENST00000374116 CHPT1Q8WUD6 406 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 ASB9Q96DX5 294 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 CNBD2Q96M20 576 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 NSUN5Q96P11 429 aaKnown RBP13.91□□□□□ -0.18
HMGA1-203ENST00000374116 SLC30A3Q99726 388 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 PRRX2Q99811 253 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 SLC17A9Q9BYT1 436 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 FSCN3Q9NQT6 498 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 SCHIP1Q9P0W5 487 aaPredicted RBP13.91□□□□□ -0.18
HMGA1-203ENST00000374116 PCDHGB4Q9UN71 923 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 PCDHGB5Q9Y5G0 923 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 KNL1Q8NG31 2342 aa13.91□□□□□ -0.18
HMGA1-203ENST00000374116 ATP6AP2A0A1C7CYW4 349 aa13.9□□□□□ -0.18
HMGA1-203ENST00000374116 A0A1W2PQ67 120 aa13.9□□□□□ -0.18
HMGA1-203ENST00000374116 NPEPPSL1A6NEC2 478 aa13.9□□□□□ -0.18
HMGA1-203ENST00000374116 BTN3A1O00481 513 aa13.9□□□□□ -0.18
HMGA1-203ENST00000374116 PPP6CO00743 305 aa13.9□□□□□ -0.18
HMGA1-203ENST00000374116 MRASO14807 208 aa13.9□□□□□ -0.18
HMGA1-203ENST00000374116 PIP5K1BO14986 540 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms