RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ASF1AQ9Y294 204 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 POLR3HQ9Y535 204 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-202ENST00000372405 PCDHGA7Q9Y5G6 932 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 CFAP20Q9Y6A4 193 aaKnown RBP13.37□□□□□ -0.27
PTPRF-202ENST00000372405 ASPDHA6ND91 283 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 E7ENX8 843 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 SLC28A1O00337 649 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 RGS14O43566 566 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 UGDHO60701 494 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 RSL1D1O76021 490 aaKnown RBP13.36□□□□□ -0.27
PTPRF-202ENST00000372405 RPL38P63173 70 aaKnown RBP13.36□□□□□ -0.27
PTPRF-202ENST00000372405 IRX1P78414 480 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-202ENST00000372405 IRF8Q02556 426 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 TAP2Q03519 686 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 DOC2AQ14183 400 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 RCAN2Q14206 197 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 KIAA0040Q15053 153 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 RPS6KA2Q15349 733 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 PYCR3Q53H96 274 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 XKR6Q5GH73 641 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 IL23RQ5VWK5 629 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 C8orf82Q6P1X6 216 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-202ENST00000372405 SYTL1Q8IYJ3 562 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 FBXW8Q8N3Y1 598 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 SELENOMQ8WWX9 145 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 NEIL2Q969S2 332 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 SCARF2Q96GP6 870 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-202ENST00000372405 PPP3R2Q96LZ3 170 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 IL17FQ96PD4 163 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 SGPP1Q9BX95 441 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 EBF2Q9HAK2 575 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 FGF22Q9HCT0 170 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 ITM2CQ9NQX7 267 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 USP36Q9P275 1121 aaKnown RBP13.36□□□□□ -0.27
PTPRF-202ENST00000372405 MAP10Q9P2G4 905 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 CA14Q9ULX7 337 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 PLAGL1Q9UM63 463 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 SUFUQ9UMX1 484 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 MRASO14807 208 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 SLC22A3O75751 556 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 SLC2A4P14672 509 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 NPPBP16860 134 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 CLCNKAP51800 687 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 ACTR3P61158 418 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 E2F2Q14209 437 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 GAS6Q14393 721 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 MMEL1Q495T6 779 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 PIGGQ5H8A4 983 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 LIPJQ5W064 366 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 FRG2Q64ET8 278 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 CAPRIN2Q6IMN6 1127 aaKnown RBP13.36□□□□□ -0.27
PTPRF-202ENST00000372405 ADNP2Q6IQ32 1131 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 DUS1LQ6P1R4 473 aaKnown RBP13.36□□□□□ -0.27
PTPRF-202ENST00000372405 CYP20A1Q6UW02 462 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 OR2T34Q8NGX1 318 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 WDR20Q8TBZ3 569 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 CCDC124Q96CT7 223 aaKnown RBP13.36□□□□□ -0.27
PTPRF-202ENST00000372405 BMFQ96LC9 184 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 FRG2BQ96QU4 278 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 CDRT15Q96T59 188 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 MENTQ9BUN1 341 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 ELOVL6Q9H5J4 265 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 ZIM2Q9NZV7 527 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 PRPF19Q9UMS4 504 aaKnown RBP13.36□□□□□ -0.27
PTPRF-202ENST00000372405 SNX6Q9UNH7 406 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 DUSP12Q9UNI6 340 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 KCNK6Q9Y257 313 aa13.36□□□□□ -0.27
PTPRF-202ENST00000372405 SCAMP1O15126 338 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 CFLARO15519 480 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 VARSP26640 1264 aaKnown RBP13.35□□□□□ -0.27
PTPRF-202ENST00000372405 GNPDA1P46926 289 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 ERFP50548 548 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 THOP1P52888 689 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 PNLIPRP1P54315 467 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 YBX1P67809 324 aaKnown RBP13.35□□□□□ -0.27
PTPRF-202ENST00000372405 PRKG2Q13237 762 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 FZD5Q13467 585 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 CEACAM7Q14002 265 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 ZNF423Q2M1K9 1284 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 TRMT5Q32P41 509 aaKnown RBP13.35□□□□□ -0.27
PTPRF-202ENST00000372405 CAPN13Q6MZZ7 669 aaPredicted RBP13.35□□□□□ -0.27
PTPRF-202ENST00000372405 SUSD1Q6UWL2 747 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 ZNF852Q6ZMS4 543 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 BNC2Q6ZN30 1099 aaPredicted RBP13.35□□□□□ -0.27
PTPRF-202ENST00000372405 SLCO4C1Q6ZQN7 724 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 ZFAND4Q86XD8 727 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 DCUN1D3Q8IWE4 304 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 OR5K2Q8NHB8 316 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 VPS33AQ96AX1 596 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 SPDL1Q96EA4 605 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 SLC39A3Q9BRY0 314 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 TIMM29Q9BSF4 260 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 RMI1Q9H9A7 625 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 RNPEPL1Q9HAU8 725 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 LRTM1Q9HBL6 345 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 NOP53Q9NZM5 478 aaKnown RBP13.35□□□□□ -0.27
PTPRF-202ENST00000372405 PNMA8BQ9ULN7 279 aaPredicted RBP13.35□□□□□ -0.27
PTPRF-202ENST00000372405 POMPQ9Y244 141 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 L3MBTL1Q9Y468 752 aa13.35□□□□□ -0.27
PTPRF-202ENST00000372405 LRP4O75096 1905 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms