RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 AGTRAPQ6RW13 159 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 CILP2Q8IUL8 1156 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 HM13Q8TCT9 377 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 SLC29A3Q9BZD2 475 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 SERHL2Q9H4I8 314 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 SERHLQ9NQF3 203 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 SAGE1Q9NXZ1 904 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 DOT1LQ8TEK3 1739 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 ALOX5P09917 674 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 PCDH1Q08174 1060 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 KLF1Q13351 362 aaPredicted RBP11.32□□□□□ -0.6
SYNE1-204ENST00000367248 PTCHD3Q3KNS1 767 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 ARMCX4Q5H9R4 360 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 FRG2Q64ET8 278 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 ABRAXAS1Q6UWZ7 409 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 FRG2BQ96QU4 278 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 DCUN1D5Q9BTE7 237 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 HDHD2Q9H0R4 259 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 LINC00597Q9H2U6 94 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 CDH22Q9UJ99 828 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 CDC14AQ9UNH5 594 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 LCHNA4D1U4 455 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 CLUP10909 449 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 ELAVL3Q14576 367 aaKnown RBP11.32□□□□□ -0.6
SYNE1-204ENST00000367248 NAIF1Q69YI7 327 aaPredicted RBP11.32□□□□□ -0.6
SYNE1-204ENST00000367248 RTL4Q6ZR62 310 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 PIM3Q86V86 326 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 CACTIN-AS1Q8N1I8 211 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 COX18Q8N8Q8 333 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 OR2T34Q8NGX1 318 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 OR2T3Q8NH03 318 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 ZBED6CLQ96FA7 236 aaPredicted RBP11.32□□□□□ -0.6
SYNE1-204ENST00000367248 MAGEE1Q9HCI5 957 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 RAPGEFL1Q9UHV5 662 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 TMEM189-UBE2V1I3L0A0 370 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 XKRYO14609 159 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 DNAJA2O60884 412 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 HNRNPCP07910 306 aaKnown RBP eCLIP11.31□□□□□ -0.6
SYNE1-204ENST00000367248 CSNK2A2P19784 350 aaPredicted RBP11.31□□□□□ -0.6
SYNE1-204ENST00000367248 TTKP33981 857 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 TMC8Q8IU68 726 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 MYDGFQ969H8 173 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 R3HDMLQ9H3Y0 253 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 KLRF1Q9NZS2 232 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 VPS29Q9UBQ0 182 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 ZNF860A6NHJ4 632 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 DLGAP3O95886 979 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 NFKB2Q00653 900 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 REP15Q6BDI9 236 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 TMPRSS9Q7Z410 1059 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 UBE2J2Q8N2K1 259 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 ZNF540Q8NDQ6 660 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 EEF1AKMT1Q8WVE0 214 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 MTG2Q9H4K7 406 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 NEK6Q9HC98 313 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 ZCCHC3Q9NUD5 404 aaKnown RBP11.31□□□□□ -0.6
SYNE1-204ENST00000367248 APOBEC3BQ9UH17 382 aaKnown RBP11.31□□□□□ -0.6
SYNE1-204ENST00000367248 SLC22A14Q9Y267 594 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 IGLON5A6NGN9 336 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 OAS1P00973 400 aaKnown RBP11.31□□□□□ -0.6
SYNE1-204ENST00000367248 SYPP08247 313 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 ETV3P41162 512 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 LGALS3BPQ08380 585 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 CARTPTQ16568 116 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 PARP8Q8N3A8 854 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 PEX13Q92968 403 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 SLC38A4Q969I6 547 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 ALG2Q9H553 416 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 KPNA4O00629 521 aaPredicted RBP11.31□□□□□ -0.6
SYNE1-204ENST00000367248 TRIM24O15164 1050 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 CYP4B1P13584 511 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 NRG3P56975 720 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 DNAJA3Q96EY1 480 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 DERL2Q9GZP9 239 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 ERGIC3Q9Y282 383 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 SMIM31A0A1B0GVY4 71 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 A6NL46 340 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 DNAJB1P25685 340 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 GDI2P50395 445 aaKnown RBP11.31□□□□□ -0.6
SYNE1-204ENST00000367248 ARMC4Q5T2S8 1044 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 BROXQ5VW32 411 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 DCUN1D3Q8IWE4 304 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 ZCCHC7Q8N3Z6 543 aaKnown RBP11.31□□□□□ -0.6
SYNE1-204ENST00000367248 TMEM125Q96AQ2 219 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 DGAT2Q96PD7 388 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 OSBPL11Q9BXB4 747 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 HEBP1Q9NRV9 189 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 DUSP3P51452 185 aaPredicted RBP11.31□□□□□ -0.6
SYNE1-204ENST00000367248 SP140Q13342 867 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 C1orf189Q5VU69 101 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 CAND1Q86VP6 1230 aaKnown RBP11.31□□□□□ -0.6
SYNE1-204ENST00000367248 PLA2G15Q8NCC3 412 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 FAM83CQ9BQN1 747 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 RNF121Q9H920 327 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 MRM3Q9HC36 420 aaKnown RBP11.31□□□□□ -0.6
SYNE1-204ENST00000367248 IKZF2Q9UKS7 526 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 PSAT1Q9Y617 370 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 AP4B1Q9Y6B7 739 aa11.31□□□□□ -0.6
SYNE1-204ENST00000367248 PNMA8CA0A1B0GUJ8 204 aa11.3□□□□□ -0.6
SYNE1-204ENST00000367248 MFN2O95140 757 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms