RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 NPIPB8E9PQR5 432 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 ALPLP05186 524 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 TIMP2P16035 220 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 GZMMP51124 257 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 DCDC1P59894 354 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 PFN3P60673 137 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 DAG1Q14118 895 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 ZNF648Q5T619 568 aaPredicted RBP20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 FRG2Q64ET8 278 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 KIAA0907Q7Z7F0 614 aaPredicted RBP20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 C10orf111Q8N326 155 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 NAT16Q8N8M0 369 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 AURKBQ96GD4 344 aaPredicted RBP20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 MRGPRX3Q96LB0 322 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 FRG2BQ96QU4 278 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 CPPED1Q9BRF8 314 aaPredicted RBP20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 SLCO2B1O94956 709 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 B3GALT4O96024 378 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 HOXB9P17482 250 aaPredicted RBP20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 PTPN2P17706 415 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 POLR2EP19388 210 aaKnown RBP20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 PTPN6P29350 595 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 STK32CQ86UX6 486 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 SLC22A15Q8IZD6 547 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 FAM9CQ8IZT9 166 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 ASZ1Q8WWH4 475 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 CLP1Q92989 425 aaKnown RBP20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 FAM162AQ96A26 154 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 TESCQ96BS2 214 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 ITCHQ96J02 903 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 EGLN2Q96KS0 407 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 DNAJB9Q9UBS3 223 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 TMED5Q9Y3A6 229 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 IRAK3Q9Y616 596 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 SERTM1A2A2V5 107 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 PRKD3O94806 890 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 AP2A2O94973 939 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 ALBP02768 609 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 ASLP04424 464 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 GSNP06396 782 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 HALP42357 657 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 NRIP1P48552 1158 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 HTRA4P83105 476 aaPredicted RBP20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 CHIT1Q13231 466 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 PLCL1Q15111 1095 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 PGS1Q32NB8 556 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 ZIK1Q3SY52 487 aaPredicted RBP20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 LPCAT2Q7L5N7 544 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 GPR149Q86SP6 731 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 ANKRD46Q86W74 232 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 ZNF557Q8N988 423 aaPredicted RBP20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 SLC47A1Q96FL8 570 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 HHIPQ96QV1 700 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 RIOK2Q9BVS4 552 aaKnown RBP20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 RMND5AQ9H871 391 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 DCAF13Q9NV06 445 aaKnown RBP20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 UTS2RQ9UKP6 389 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 PDE4DIPQ5VU43 2346 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 TMEM202A6NGA9 273 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 OR2AG2A6NM03 316 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 FADS2P1A8MWK0 482 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 FAM220BPB1ANY3 271 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 CREG1O75629 220 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 TRMUO75648 421 aaKnown RBP20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 RHOP08100 348 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 AMD1P17707 334 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 MAPK1P28482 360 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 PON2Q15165 354 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 ZNF77Q15935 545 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 ARHGAP15Q53QZ3 475 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 HENMT1Q5T8I9 393 aaKnown RBP20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 CYP2U1Q7Z449 544 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 RNF175Q8N4F7 328 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 MRPL43Q8N983 215 aaKnown RBP20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 DDHD1Q8NEL9 900 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 FBXL8Q96CD0 374 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 HIC2Q96JB3 615 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 APOLD1Q96LR9 279 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 MTG2Q9H4K7 406 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 HCFC2Q9Y5Z7 792 aa20.25■□□□□ 0.83
CCDC88B-203ENST00000359902 UPK3BL1B0FP48 263 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 UPK3BL2E5RIL1 263 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 LRATO95237 230 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 FGF19O95750 216 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 CST1P01037 141 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 CTSLP07711 333 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 RETP07949 1114 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 JUPP14923 745 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 CDKN2CP42773 168 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 PLPP4Q5VZY2 271 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 ZDHHC13Q8IUH4 622 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 TMEM132CQ8N3T6 1108 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 TRAM1L1Q8N609 369 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 TBC1D14Q9P2M4 693 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 WNT6Q9Y6F9 365 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 PRRC2BQ5JSZ5 2229 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 TSPAN11A1L157 253 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 C16orf96A6NNT2 1141 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 G3V2T6 193 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 KIAA0355O15063 1070 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms