RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 HACL1Q9UJ83 578 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 TRAPPC4Q9Y296 219 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 PCDHGA6Q9Y5G7 932 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 V9GYH0 126 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 GBF1Q92538 1859 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 WDR90Q96KV7 1748 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 PNMA8CA0A1B0GUJ8 204 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 LINC00854A0A1B0GVQ3 168 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 C12orf71A8MTZ7 269 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 FAM25AB3EWG3 89 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 FAM25CB3EWG5 89 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 FAM25GB3EWG6 89 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 PER2O15055 1255 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 KIAA0513O60268 411 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 UGT2B17O75795 530 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 ZNF682O95780 498 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 IGLV3-25P01717 112 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 CDK1P06493 297 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 YES1P07947 543 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 ADRA2AP08913 450 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 HAPLN1P10915 354 aaPredicted RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 CBLP22681 906 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 HMGB2P26583 209 aaKnown RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 PNPLA4P41247 253 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 PGFP49763 221 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 NUDT6P53370 316 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 VLDLRP98155 873 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 RAD51Q06609 339 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 ARHGAP1Q07960 439 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 NPRL3Q12980 569 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 SLC14A1Q13336 389 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 ZNF79Q15937 498 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 GPAT3Q53EU6 434 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 MRNIPQ6NTE8 343 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 RGMBQ6NW40 437 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 ERAP2Q6P179 960 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 SAMD7Q7Z3H4 446 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 ZNF467Q7Z7K2 595 aaPredicted RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 CCDC28AQ8IWP9 274 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 FAM109AQ8N4B1 249 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 DNAJC22Q8N4W6 341 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 TOP6BLQ8N6T0 577 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 GLB1L3Q8NCI6 653 aaPredicted RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 OR4M1Q8NGD0 313 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 ARRDC2Q8TBH0 407 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 METTL6Q8TCB7 284 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 BLOC1S5Q8TDH9 187 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 TTC9Q92623 222 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 GGHQ92820 318 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 TMCO6Q96DC7 493 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 SPATA17Q96L03 361 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 FCRL2Q96LA5 508 aaPredicted RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 SLC30A2Q9BRI3 323 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 TTPALQ9BTX7 342 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 PRRG3Q9BZD7 231 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 ZNF408Q9H9D4 720 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 CATSPERZQ9NTU4 200 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 FKBP14Q9NWM8 211 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 TOR4AQ9NXH8 423 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 TAS2R16Q9NYV7 291 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 PCDHGB2Q9Y5G2 931 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 TIMM13Q9Y5L4 95 aaPredicted RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 SNX8Q9Y5X2 465 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 LOC285095A0A1B0GVY8 99 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 OR7A17O14581 309 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 TEX28O15482 410 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 FGF10O15520 208 aaPredicted RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 CPNE3O75131 537 aaKnown RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 ZNF780AO75290 641 aaPredicted RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 RPP40O75818 363 aaKnown RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 SLITRK5O94991 958 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 FKBP9O95302 570 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 SEMG1P04279 462 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 PGRP06401 933 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 STSP08842 583 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 TRAPPC2P0DI81 140 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 TRAPPC2BP0DI82 140 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 IL7P13232 177 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 SLC2A4P14672 509 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 HOXB8P17481 243 aaPredicted RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 FPR1P21462 350 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 AZGP1P25311 298 aaKnown RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 PKLRP30613 574 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 DNAJA1P31689 397 aaKnown RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 AKT1P31749 480 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 HNF4AP41235 474 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 PIK3CGP48736 1102 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 RGS6P49758 472 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 ELP6Q0PNE2 266 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 CAMK2GQ13555 558 aaPredicted RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 EFR3AQ14156 821 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 PTCHD3Q3KNS1 767 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 ARMCX4Q5H9R4 360 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 ATG9BQ674R7 924 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 GPR153Q6NV75 609 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 FAHD1Q6P587 224 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 VTCN1Q7Z7D3 282 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 NLRP8Q86W28 1048 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 RTL3Q8N8U3 475 aaKnown RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 ARRDC4Q8NCT1 418 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms